WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Statistical Wald tests (lfcThreshold = 0.5) were performed in R with the DESeq2 package (v1.12.4). Differentially expressed genes were defined as having p-values corrected for multiple testing (Bonferroni) less than 0.1. Description  Transcripts that showed significantly increased expression in jmjd-5(tm3735) at 20C, comparing to in N2.
Primary Identifier  WBPaper00051338:jmjd-5(tm3735)_upregulated_G0
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0 Anatomy Terms

8 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000190 warf-1 F45E4.1 Caenorhabditis elegans
WBGene00001483 fog-3 C03C11.2 Caenorhabditis elegans
WBGene00002263 lea-1 K08H10.1 Caenorhabditis elegans
WBGene00004747 sdc-3 C25D7.3 Caenorhabditis elegans
WBGene00008681 scrm-4 F11A6.2 Caenorhabditis elegans
WBGene00012757 Y41C4A.11 Y41C4A.11 Caenorhabditis elegans
WBGene00013584 nhr-243 Y80D3A.4 Caenorhabditis elegans
WBGene00009038 F22B3.7 F22B3.7 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007387 jmjd-5 C06H2.3 Caenorhabditis elegans

0 Regulated By Molecule