WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 121, F53B1.6_3658-ZK829.3_3484, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:F53B1.6_3658-ZK829.3_3484

0 Anatomy Terms

50 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000442 ceh-19 F20D12.6 Caenorhabditis elegans
WBGene00003388 moe-3 F32A11.6 Caenorhabditis elegans
WBGene00007174 mboa-1 B0395.2 Caenorhabditis elegans
WBGene00007925 C34C12.6 C34C12.6 Caenorhabditis elegans
WBGene00008292 C54C8.4 C54C8.4 Caenorhabditis elegans
WBGene00008763 F13G3.3 F13G3.3 Caenorhabditis elegans
WBGene00008875 F15H10.8 F15H10.8 Caenorhabditis elegans
WBGene00008894 F16H6.4 F16H6.4 Caenorhabditis elegans
WBGene00009438 F35G2.5 F35G2.5 Caenorhabditis elegans
WBGene00010343 F59F5.4 F59F5.4 Caenorhabditis elegans
WBGene00010655 K08D8.1 K08D8.1 Caenorhabditis elegans
WBGene00011594 T07G12.3 T07G12.3 Caenorhabditis elegans
WBGene00011675 cyp-13A3 T10B9.5 Caenorhabditis elegans
WBGene00011833 T19B10.5 T19B10.5 Caenorhabditis elegans
WBGene00013585 cyp-42A1 Y80D3A.5 Caenorhabditis elegans
WBGene00014094 ZK829.3 ZK829.3 Caenorhabditis elegans
WBGene00015019 B0205.4 B0205.4 Caenorhabditis elegans
WBGene00015135 cyp-23A1 B0304.3 Caenorhabditis elegans
WBGene00015218 B0507.1 B0507.1 Caenorhabditis elegans
WBGene00015311 C01G5.9 C01G5.9 Caenorhabditis elegans
WBGene00015910 C17F4.2 C17F4.2 Caenorhabditis elegans
WBGene00017865 F27D9.7 F27D9.7 Caenorhabditis elegans
WBGene00018738 swip-10 F53B1.6 Caenorhabditis elegans
WBGene00019285 cbn-1 K01A2.11 Caenorhabditis elegans
WBGene00019318 K02E10.4 K02E10.4 Caenorhabditis elegans
WBGene00019644 cpt-4 K11D12.4 Caenorhabditis elegans
WBGene00020277 T06A1.1 T06A1.1 Caenorhabditis elegans
WBGene00020571 lpr-7 T19D7.3 Caenorhabditis elegans
WBGene00022756 nhr-251 ZK488.4 Caenorhabditis elegans
WBGene00044059 T27C5.12 T27C5.12 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule