WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  For each set of mutant data, the repeats were averaged, and a Z test [Z=(observedexpected)\/SE] was performed in Excel. A moderate correction for multiple testing (~17,600 genes) was performed by multiplying the calculated P-value by 10,000. After this correction, all genes with up- or downregulation greater than twofold, P<0.05 in any given mutant were selected. The hypergeometric probability test was used to calculate the significance of overlap of gene groups. Authors determined whether transcripts of Group I-IV genes are bound by GLD-1, based on a minimum criteria of >1.5 enrichment in GLD-1 immunoprecipitated samples compared to control immunoprecipitations (P < 0.01). Description  Genes with significantly increased expression levels only in the lin-35 mutant relative to controls.
Primary Identifier  WBPaper00027758:Group_IV

0 Anatomy Terms

94 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000041 aco-2 F54H12.1 Caenorhabditis elegans
WBGene00000214 asp-1 Y39B6A.20 Caenorhabditis elegans
WBGene00000413 cdt-1 Y54E10A.15 Caenorhabditis elegans
WBGene00000423 ced-9 T07C4.8 Caenorhabditis elegans
WBGene00000704 col-130 F08G5.4 Caenorhabditis elegans
WBGene00000751 col-178 C34F6.2 Caenorhabditis elegans
WBGene00000869 cyc-1 C54G4.8 Caenorhabditis elegans
WBGene00001092 dro-1 F53A2.5 Caenorhabditis elegans
WBGene00001230 eif-3.G F22B5.2 Caenorhabditis elegans
WBGene00001748 gsp-2 F56C9.1 Caenorhabditis elegans
WBGene00002059 ife-1 F53A2.6 Caenorhabditis elegans
WBGene00002066 ifg-1 M110.4 Caenorhabditis elegans
WBGene00002845 let-711 F57B9.2 Caenorhabditis elegans
WBGene00003014 lin-28 F02E9.2 Caenorhabditis elegans
WBGene00003221 mes-3 F54C1.3 Caenorhabditis elegans
WBGene00003225 mev-1 T07C4.7 Caenorhabditis elegans
WBGene00003258 cogc-1 Y54E10A.2 Caenorhabditis elegans
WBGene00003397 mom-5 T23D8.1 Caenorhabditis elegans
WBGene00003401 mpk-1 F43C1.2 Caenorhabditis elegans
WBGene00003829 nud-1 F53A2.4 Caenorhabditis elegans
WBGene00003834 nxf-1 C15H11.3 Caenorhabditis elegans
WBGene00004032 pkc-1 F57F5.5 Caenorhabditis elegans
WBGene00004978 spg-7 Y47G6A.10 Caenorhabditis elegans
WBGene00005386 srh-170 R08H2.3 Caenorhabditis elegans
WBGene00006047 ssp-19 C55C2.2 Caenorhabditis elegans
WBGene00006405 itsn-1 Y116A8C.36 Caenorhabditis elegans
WBGene00006785 unc-50 T07A5.2 Caenorhabditis elegans
WBGene00006829 unc-101 K11D2.3 Caenorhabditis elegans
WBGene00007914 mys-4 C34B7.4 Caenorhabditis elegans
WBGene00008184 C49A1.1 C49A1.1 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The stage after an hermaphrodite animal is fully-developed and reaches maturity. adult hermaphrodite Ce WBls:0000057

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003020 lin-35 C32F10.2 Caenorhabditis elegans

0 Regulated By Molecule