WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

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Expression Cluster :

Algorithm  To identify the genes that show consistent and significant expression changes across the independent biological replicates of hcf-1(-) or sir-2.1(O/E), authors used Significance Analysis of Microarrays (SAM) with a stringent criteria of expected false discovery rate (FDR) set at 0%. Description  Genes upregulated in hcf-1(-), upregulated in sir-2.1(O/E) and no change in daf-2(-).
Primary Identifier  WBPaper00040184:hcf-1up_sir-2.1up_daf-2nc
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0 Anatomy Terms

61 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001325 eor-2 C44H4.7 Caenorhabditis elegans
WBGene00001491 frm-4 C24A11.8 Caenorhabditis elegans
WBGene00001811 haf-1 C30H6.6 Caenorhabditis elegans
WBGene00001981 hnd-1 C44C10.8 Caenorhabditis elegans
WBGene00002031 hst-6 Y34B4A.3 Caenorhabditis elegans
WBGene00003184 mei-2 F57B10.12 Caenorhabditis elegans
WBGene00003219 mes-1 F54F7.5 Caenorhabditis elegans
WBGene00003599 nhl-3 W04H10.3 Caenorhabditis elegans
WBGene00003618 nhr-19 E02H1.7 Caenorhabditis elegans
WBGene00003620 nhr-21 F21D12.1 Caenorhabditis elegans
WBGene00003626 nhr-32 K08H2.8 Caenorhabditis elegans
WBGene00003651 nhr-61 W01D2.2 Caenorhabditis elegans
WBGene00004352 rgs-9 ZC53.7 Caenorhabditis elegans
WBGene00004354 rgs-11 F45B8.1 Caenorhabditis elegans
WBGene00006461 tag-96 M01D7.4 Caenorhabditis elegans
WBGene00006959 xbp-1 R74.3 Caenorhabditis elegans
WBGene00007332 C05C10.5 C05C10.5 Caenorhabditis elegans
WBGene00007736 igdb-2 C25G4.10 Caenorhabditis elegans
WBGene00008052 ctns-1 C41C4.7 Caenorhabditis elegans
WBGene00008412 D2030.2 D2030.2 Caenorhabditis elegans
WBGene00008747 phf-31 F13E6.3 Caenorhabditis elegans
WBGene00009025 phf-34 F21G4.4 Caenorhabditis elegans
WBGene00009163 drsh-1 F26E4.10 Caenorhabditis elegans
WBGene00009404 F35C11.5 F35C11.5 Caenorhabditis elegans
WBGene00009439 mlcd-1 F35G12.1 Caenorhabditis elegans
WBGene00010234 ttr-50 F58B3.9 Caenorhabditis elegans
WBGene00011152 R09A8.1 R09A8.1 Caenorhabditis elegans
WBGene00011344 T01G9.2 T01G9.2 Caenorhabditis elegans
WBGene00011388 T02G6.5 T02G6.5 Caenorhabditis elegans
WBGene00011972 T23G11.7 T23G11.7 Caenorhabditis elegans
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2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

2 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001827 hcf-1 C46A5.9 Caenorhabditis elegans
WBGene00004800 sir-2.1 R11A8.4 Caenorhabditis elegans

0 Regulated By Molecule