WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  For differential gene expression analysis, sets of independent mutant and control mapped reads (e.g biological replicates) were used in cuffdiff analysis. The cutoff of FDR(q value)=0.05 was used as a significance cutoff for all the analyses. Description  Transcripts that showed significantly increased expression in nos-1(gv5)nos-2(RNAi) comparing to in wild type, in primordial germ cells (PGCs) at embryo stage, according to SMARTseq.
Primary Identifier  WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_embryo_SMARTseq

1 Anatomy Terms

Definition Name Synonym Primary Identifier
member of a set of two cells that generate exclusively sperm and ovum. germline precursor cell PGC WBbt:0006849

171 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000164 apm-3 F53H8.1 Caenorhabditis elegans
WBGene00000183 arf-5 F57H12.1 Caenorhabditis elegans
WBGene00000268 bre-3 B0464.4 Caenorhabditis elegans
WBGene00000378 cct-2 T21B10.7 Caenorhabditis elegans
WBGene00000500 chn-1 T09B4.10 Caenorhabditis elegans
WBGene00000512 ckb-2 B0285.9 Caenorhabditis elegans
WBGene00000772 cpb-3 B0414.5 Caenorhabditis elegans
WBGene00000803 csb-1 F53H4.1 Caenorhabditis elegans
WBGene00000833 cts-1 T20G5.2 Caenorhabditis elegans
WBGene00000868 cyb-3 T06E6.2 Caenorhabditis elegans
WBGene00000883 cyn-7 Y75B12B.2 Caenorhabditis elegans
WBGene00001094 dars-1 B0464.1 Caenorhabditis elegans
WBGene00001239 elo-1 F56H11.4 Caenorhabditis elegans
WBGene00001503 fum-1 H14A12.2 Caenorhabditis elegans
WBGene00001569 meg-3 F52D2.4 Caenorhabditis elegans
WBGene00001638 gly-13 B0416.6 Caenorhabditis elegans
WBGene00001755 gst-7 F11G11.2 Caenorhabditis elegans
WBGene00001772 gst-24 F37B1.1 Caenorhabditis elegans
WBGene00001792 gst-44 F13A7.10 Caenorhabditis elegans
WBGene00001981 hnd-1 C44C10.8 Caenorhabditis elegans
WBGene00002008 hsp-4 F43E2.8 Caenorhabditis elegans
WBGene00002029 hst-2 C34F6.4 Caenorhabditis elegans
WBGene00002070 ile-1 K07A1.8 Caenorhabditis elegans
WBGene00002073 ima-2 F26B1.3 Caenorhabditis elegans
WBGene00002079 xpo-2 Y48G1A.5 Caenorhabditis elegans
WBGene00002083 inf-1 F57B9.6 Caenorhabditis elegans
WBGene00002250 lap-2 W07G4.4 Caenorhabditis elegans
WBGene00003087 lsy-2 F49H12.1 Caenorhabditis elegans
WBGene00003159 mcm-7 F32D1.10 Caenorhabditis elegans
WBGene00003185 mek-1 K08A8.1 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The whole period of embryogenesis in the nematode Caenorhabditis elegans, from the formation of an egg until hatching. embryo Ce WBls:0000003

0 Processes

0 Regulated By Gene

0 Regulated By Molecule