WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  A gene model was built based on the WS260 annotation. Tag counts for each gene were extracted from STAR aligned BAM files, anddifferential gene expression between N2 and mutant backgrounds was tested using DESeq2. A false discovery rate(FDR) < 0.01 and LFC > 0.5849 was used to define genes as upregulated, and FDR < 0.01 and LFC < -1 was used to define genes asdownregulated. Description  Transcripts that showed significantly increased expression in lin-15B(we23) comparing to in N2 animals at starved L1 larva stage.
Primary Identifier  WBPaper00062056:lin-15B(we23)_upregulated

0 Anatomy Terms

160 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000267 bre-2 Y39E4B.9 Caenorhabditis elegans
WBGene00000491 che-12 B0024.8 Caenorhabditis elegans
WBGene00000770 cpb-1 C40H1.1 Caenorhabditis elegans
WBGene00001110 duo-1 F38B7.5 Caenorhabditis elegans
WBGene00001156 ech-7 Y105E8A.4 Caenorhabditis elegans
WBGene00001606 gln-5 F26D10.10 Caenorhabditis elegans
WBGene00001661 gop-2 C34E10.2 Caenorhabditis elegans
WBGene00001662 gop-3 C34E10.1 Caenorhabditis elegans
WBGene00001872 him-14 ZK1127.11 Caenorhabditis elegans
WBGene00002033 htp-2 Y73B6BL.2 Caenorhabditis elegans
WBGene00002998 lin-9 ZK637.7 Caenorhabditis elegans
WBGene00003602 nhr-3 H01A20.1 Caenorhabditis elegans
WBGene00004093 ppw-1 C18E3.7 Caenorhabditis elegans
WBGene00004149 trpl-5 T16A1.7 Caenorhabditis elegans
WBGene00004509 rrf-2 M01G12.12 Caenorhabditis elegans
WBGene00004775 sep-1 Y47G6A.12 Caenorhabditis elegans
WBGene00005210 srg-53 T02B11.1 Caenorhabditis elegans
WBGene00005543 sri-31 B0454.2 Caenorhabditis elegans
WBGene00005582 sri-70 Y61B8B.1 Caenorhabditis elegans
WBGene00006375 syp-1 F26D2.2 Caenorhabditis elegans
WBGene00006916 vha-7 C26H9A.1 Caenorhabditis elegans
WBGene00007303 rnh-1.3 C04F12.9 Caenorhabditis elegans
WBGene00007334 C05C10.7 C05C10.7 Caenorhabditis elegans
WBGene00007659 pals-5 C17H1.6 Caenorhabditis elegans
WBGene00007764 C27B7.7 C27B7.7 Caenorhabditis elegans
WBGene00007787 C27H6.8 C27H6.8 Caenorhabditis elegans
WBGene00008267 C53A5.9 C53A5.9 Caenorhabditis elegans
WBGene00008490 cyts-1 F01D4.8 Caenorhabditis elegans
WBGene00008580 dsb-1 F08G5.1 Caenorhabditis elegans
WBGene00009507 mus-101 F37D6.1 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00023497 lin-15B ZK662.4 Caenorhabditis elegans

0 Regulated By Molecule