WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Cuffdiff and DEGseq were used to calculate the differential expression of protein-coding genes with and without the prg-1 mutation, and authors selected genes which had more than two-fold difference in expression (P < 0.05, q < 0.01 of Storey) from DEGseq outcomes. The intersection of genes which authors selected from DEGseq outcomes and genes which had more than two-fold difference in expression (P < 0.05) from Cuffdiff outcomes was defined as differentially expressed genes. Description  Protein coding genes with decreased expression in prg-1(wm161) comparing to in N2.
Primary Identifier  WBPaper00045316:prg-1_downregulated_L3

0 Anatomy Terms

215 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000202 exos-4.2 Y6D11A.1 Caenorhabditis elegans
WBGene00000602 col-13 F15H10.2 Caenorhabditis elegans
WBGene00000710 col-137 Y51H4A.9 Caenorhabditis elegans
WBGene00000744 col-171 T10E10.7 Caenorhabditis elegans
WBGene00001387 far-3 F15B9.1 Caenorhabditis elegans
WBGene00001397 fat-5 W06D12.3 Caenorhabditis elegans
WBGene00001478 fmo-3 Y39A1A.19 Caenorhabditis elegans
WBGene00001480 fmo-5 H24K24.5 Caenorhabditis elegans
WBGene00001780 gst-32 Y53F4B.37 Caenorhabditis elegans
WBGene00002064 iff-1 T05G5.10 Caenorhabditis elegans
WBGene00003474 mtl-2 T08G5.10 Caenorhabditis elegans
WBGene00003548 nas-30 Y95B8A.1 Caenorhabditis elegans
WBGene00003581 ndx-4 Y37H9A.6 Caenorhabditis elegans
WBGene00003610 nhr-11 ZC410.1 Caenorhabditis elegans
WBGene00003755 nlp-17 Y45F10A.5 Caenorhabditis elegans
WBGene00003762 nlp-24 F35B12.7 Caenorhabditis elegans
WBGene00003763 nlp-25 Y43F8C.1 Caenorhabditis elegans
WBGene00003764 nlp-26 Y43F8C.2 Caenorhabditis elegans
WBGene00003767 nlp-29 B0213.4 Caenorhabditis elegans
WBGene00003768 nlp-30 B0213.5 Caenorhabditis elegans
WBGene00003771 nlp-33 T19C4.7 Caenorhabditis elegans
WBGene00003994 pgl-3 C18G1.4 Caenorhabditis elegans
WBGene00004016 phf-5 Y54F10BM.14 Caenorhabditis elegans
WBGene00004236 ptr-22 Y80D3A.7 Caenorhabditis elegans
WBGene00004410 rplp-2.2 Y62E10A.1 Caenorhabditis elegans
WBGene00004965 spe-11 F48C1.7 Caenorhabditis elegans
WBGene00004997 spp-12 T22G5.7 Caenorhabditis elegans
WBGene00005324 T27A1.1 T27A1.1 Caenorhabditis elegans
WBGene00006060 sth-1 ZC513.12 Caenorhabditis elegans
WBGene00006510 mtrr-1 C01G6.6 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The third stage larva. At 25 Centigrade, it ranges 32.5-40 hours after fertilization, 18.5-26 hours after hatch. L3 larva Ce WBls:0000035

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004178 prg-1 D2030.6 Caenorhabditis elegans

0 Regulated By Molecule