WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  A gene model was built based on the WS260 annotation. Tag counts for each gene were extracted from STAR aligned BAM files, anddifferential gene expression between N2 and mutant backgrounds was tested using DESeq2. A false discovery rate(FDR) < 0.01 and LFC > 0.5849 was used to define genes as upregulated, and FDR < 0.01 and LFC < -1 was used to define genes asdownregulated. Description  Transcripts that showed significantly increased expression in met-2(n4256) comparing to in N2 animals at starved L1 larva stage.
Primary Identifier  WBPaper00062056:met-2(n4256)_upregulated

0 Anatomy Terms

199 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000267 bre-2 Y39E4B.9 Caenorhabditis elegans
WBGene00000770 cpb-1 C40H1.1 Caenorhabditis elegans
WBGene00000864 cya-2 F59H6.7 Caenorhabditis elegans
WBGene00001110 duo-1 F38B7.5 Caenorhabditis elegans
WBGene00001480 fmo-5 H24K24.5 Caenorhabditis elegans
WBGene00001544 gcy-19 C17F4.6 Caenorhabditis elegans
WBGene00001598 glh-1 T21G5.3 Caenorhabditis elegans
WBGene00001606 gln-5 F26D10.10 Caenorhabditis elegans
WBGene00001607 gln-6 C28D4.3 Caenorhabditis elegans
WBGene00001661 gop-2 C34E10.2 Caenorhabditis elegans
WBGene00001862 him-3 ZK381.1 Caenorhabditis elegans
WBGene00004242 puf-6 F18A11.1 Caenorhabditis elegans
WBGene00004243 puf-7 B0273.2 Caenorhabditis elegans
WBGene00004775 sep-1 Y47G6A.12 Caenorhabditis elegans
WBGene00004960 spe-6 Y66D12A.20 Caenorhabditis elegans
WBGene00005210 srg-53 T02B11.1 Caenorhabditis elegans
WBGene00005423 srh-213 T22F3.5 Caenorhabditis elegans
WBGene00005543 sri-31 B0454.2 Caenorhabditis elegans
WBGene00005573 sri-61 F34D6.6 Caenorhabditis elegans
WBGene00005574 sri-62 F34D6.5 Caenorhabditis elegans
WBGene00005653 srr-2 T26H2.8 Caenorhabditis elegans
WBGene00006375 syp-1 F26D2.2 Caenorhabditis elegans
WBGene00006916 vha-7 C26H9A.1 Caenorhabditis elegans
WBGene00007109 edg-1 B0035.6 Caenorhabditis elegans
WBGene00007173 B0393.8 B0393.8 Caenorhabditis elegans
WBGene00007219 mihp-1 C01A2.7 Caenorhabditis elegans
WBGene00008003 enu-3.2 C38D4.1 Caenorhabditis elegans
WBGene00008126 sre-21 C47A10.4 Caenorhabditis elegans
WBGene00008151 rrp-1 C47E12.7 Caenorhabditis elegans
WBGene00008387 zhp-2 D1081.9 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019883 met-2 R05D3.11 Caenorhabditis elegans

0 Regulated By Molecule