WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  The counts were then normalized using DESeq2 package in R 3.3.2 . The differences in gene expression were calculated using the negative binomial test with Benjamini-Hochberg multiple test correction using DESeq2. FDR < 10% irrespective of their log2FoldChange are reported. Description  Transcripts that showed significantly changed expression 24 hours after JU2519 larva animals were infected by oomycete Myzocytiopsis humicola.
Primary Identifier  WBPaper00053657:JU2519_M.humicola-infection_24hr Regulated By Treatment  Oomycete: Myzocytiopsis humicola

0 Anatomy Terms

519 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000019 abt-1 C24F3.5 Caenorhabditis elegans
WBGene00000031 abu-8 C03A7.14 Caenorhabditis elegans
WBGene00000373 cyp-14A5 F08F3.7 Caenorhabditis elegans
WBGene00000535 cpi-1 K08B4.6 Caenorhabditis elegans
WBGene00000556 cnc-2 R09B5.3 Caenorhabditis elegans
WBGene00000558 cnc-4 R09B5.9 Caenorhabditis elegans
WBGene00000620 col-43 ZC513.8 Caenorhabditis elegans
WBGene00000634 col-58 F26B1.4 Caenorhabditis elegans
WBGene00000668 col-93 W05B2.5 Caenorhabditis elegans
WBGene00000703 col-129 M18.1 Caenorhabditis elegans
WBGene00000729 col-156 F57B7.3 Caenorhabditis elegans
WBGene00000771 cpb-2 C30B5.3 Caenorhabditis elegans
WBGene00000878 cyn-2 ZK520.5 Caenorhabditis elegans
WBGene00001245 elo-7 F56H11.3 Caenorhabditis elegans
WBGene00001387 far-3 F15B9.1 Caenorhabditis elegans
WBGene00001414 fer-1 F43G9.6 Caenorhabditis elegans
WBGene00001487 frk-1 T04B2.2 Caenorhabditis elegans
WBGene00001603 gln-2 K03H1.1 Caenorhabditis elegans
WBGene00001839 hdl-1 ZK829.2 Caenorhabditis elegans
WBGene00002024 hsp-43 C14F11.5 Caenorhabditis elegans
WBGene00002114 ins-31 T10D4.4 Caenorhabditis elegans
WBGene00002186 kel-10 T16H12.6 Caenorhabditis elegans
WBGene00002193 kin-5 T13H10.1 Caenorhabditis elegans
WBGene00002204 kin-21 W08D2.8 Caenorhabditis elegans
WBGene00002206 kin-24 K07F5.4 Caenorhabditis elegans
WBGene00002227 klp-17 W02B12.7 Caenorhabditis elegans
WBGene00003424 msp-3 F26G1.7 Caenorhabditis elegans
WBGene00003426 msp-19 F36H12.7 Caenorhabditis elegans
WBGene00003448 msp-55 C09B9.6 Caenorhabditis elegans
WBGene00003470 msp-152 ZK546.6 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038

0 Processes

0 Regulated By Gene

0 Regulated By Molecule