WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Limma Package. When generating the contrast matrix in limma: wildtype data was counted as wild-type and rpl-33 & rpl-5 data were both counted as RP null data. For this reason there is only one fold change value per gene as calculated by the difference between RP null RNA and wild-type RNA. Description  Transcripts that showed significantly increased expression in rpl-5(cc5998) vs wild type (PD1074) and rpl-33(cc2558) vs wild type (PD1074) animals.
Primary Identifier  WBPaper00056293:rpl-5(0)-rpl-33(0)_upregulated

0 Anatomy Terms

312 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000046 acr-7 T09A5.3 Caenorhabditis elegans
WBGene00000093 agt-1 Y62E10A.5 Caenorhabditis elegans
WBGene00000120 aly-1 C01F6.5 Caenorhabditis elegans
WBGene00000145 apc-11 F35G12.9 Caenorhabditis elegans
WBGene00000235 baf-1 B0464.7 Caenorhabditis elegans
WBGene00000442 ceh-19 F20D12.6 Caenorhabditis elegans
WBGene00000526 clc-5 C01C10.4 Caenorhabditis elegans
WBGene00001033 dnj-15 K08D10.2 Caenorhabditis elegans
WBGene00001251 elt-3 K02B9.4 Caenorhabditis elegans
WBGene00001683 gpd-1 T09F3.3 Caenorhabditis elegans
WBGene00001686 gpd-4 F33H1.2 Caenorhabditis elegans
WBGene00001772 gst-24 F37B1.1 Caenorhabditis elegans
WBGene00001852 hil-1 C30G7.1 Caenorhabditis elegans
WBGene00001901 his-27 K06C4.13 Caenorhabditis elegans
WBGene00001907 his-33 F17E9.13 Caenorhabditis elegans
WBGene00001923 his-49 F07B7.5 Caenorhabditis elegans
WBGene00001995 hpl-1 K08H2.6 Caenorhabditis elegans
WBGene00002021 hsp-17 F52E1.7 Caenorhabditis elegans
WBGene00002030 hst-3.1 F40H3.5 Caenorhabditis elegans
WBGene00002136 inx-14 F07A5.1 Caenorhabditis elegans
WBGene00002178 jnk-1 B0478.1 Caenorhabditis elegans
WBGene00002199 kin-15 M176.6 Caenorhabditis elegans
WBGene00002982 lgg-3 B0336.8 Caenorhabditis elegans
WBGene00003038 lin-56 ZK673.3 Caenorhabditis elegans
WBGene00003528 nas-9 C37H5.9 Caenorhabditis elegans
WBGene00003563 ncs-1 C44C1.3 Caenorhabditis elegans
WBGene00003650 nhr-60 F57A10.5 Caenorhabditis elegans
WBGene00003692 nhr-102 T06C12.6 Caenorhabditis elegans
WBGene00003702 nhr-112 Y70C5C.6 Caenorhabditis elegans
WBGene00003740 nlp-2 T24D8.5 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024

0 Processes

2 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004416 rpl-5 F54C9.5 Caenorhabditis elegans
WBGene00004447 rpl-35A F10E7.7 Caenorhabditis elegans

0 Regulated By Molecule