WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Cuffdiff and DEGseq were used to calculate the differential expression of protein-coding genes with and without the prg-1 mutation, and authors selected genes which had more than two-fold difference in expression (P < 0.05, q < 0.01 of Storey) from DEGseq outcomes. The intersection of genes which authors selected from DEGseq outcomes and genes which had more than two-fold difference in expression (P < 0.05) from Cuffdiff outcomes was defined as differentially expressed genes. Description  Protein coding genes with decreased expression in prg-1(wm161) comparing to in N2.
Primary Identifier  WBPaper00045316:prg-1_downregulated_L1

0 Anatomy Terms

177 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000082 adt-1 C02B4.1 Caenorhabditis elegans
WBGene00000202 exos-4.2 Y6D11A.1 Caenorhabditis elegans
WBGene00000301 cav-1 T13F2.8 Caenorhabditis elegans
WBGene00000497 chs-2 F48A11.1 Caenorhabditis elegans
WBGene00000620 col-43 ZC513.8 Caenorhabditis elegans
WBGene00000631 col-54 F33D11.3 Caenorhabditis elegans
WBGene00000634 col-58 F26B1.4 Caenorhabditis elegans
WBGene00000641 col-65 K08C9.4 Caenorhabditis elegans
WBGene00000665 col-90 C29E4.1 Caenorhabditis elegans
WBGene00000672 col-97 ZK1010.7 Caenorhabditis elegans
WBGene00000678 col-104 F58F6.1 Caenorhabditis elegans
WBGene00000726 col-153 F17C11.3 Caenorhabditis elegans
WBGene00000745 col-172 F38B6.5 Caenorhabditis elegans
WBGene00000746 col-173 F41C6.5 Caenorhabditis elegans
WBGene00001067 dpy-5 F27C1.8 Caenorhabditis elegans
WBGene00001387 far-3 F15B9.1 Caenorhabditis elegans
WBGene00001500 ftn-1 C54F6.14 Caenorhabditis elegans
WBGene00001716 grl-7 T02E9.2 Caenorhabditis elegans
WBGene00001778 gst-30 ZK546.11 Caenorhabditis elegans
WBGene00002018 hsp-16.41 Y46H3A.2 Caenorhabditis elegans
WBGene00003534 nas-15 T04G9.2 Caenorhabditis elegans
WBGene00003548 nas-30 Y95B8A.1 Caenorhabditis elegans
WBGene00003703 nhr-113 ZK1025.9 Caenorhabditis elegans
WBGene00003763 nlp-25 Y43F8C.1 Caenorhabditis elegans
WBGene00003771 nlp-33 T19C4.7 Caenorhabditis elegans
WBGene00003829 nud-1 F53A2.4 Caenorhabditis elegans
WBGene00004230 ptr-16 T21H3.2 Caenorhabditis elegans
WBGene00004398 rol-8 ZK1290.3 Caenorhabditis elegans
WBGene00004997 spp-12 T22G5.7 Caenorhabditis elegans
WBGene00005016 sqt-1 B0491.2 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004178 prg-1 D2030.6 Caenorhabditis elegans

0 Regulated By Molecule