WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 170, C33H5.1-F49C12.2, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:C33H5.1-F49C12.2

0 Anatomy Terms

11 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006085 str-18 T23D5.6 Caenorhabditis elegans
WBGene00008778 nhr-264 F14A5.1 Caenorhabditis elegans
WBGene00009871 F49C12.1 F49C12.1 Caenorhabditis elegans
WBGene00009872 F49C12.2 F49C12.2 Caenorhabditis elegans
WBGene00009873 F49C12.3 F49C12.3 Caenorhabditis elegans
WBGene00009874 F49C12.4 F49C12.4 Caenorhabditis elegans
WBGene00009875 F49C12.5 F49C12.5 Caenorhabditis elegans
WBGene00016370 C33H5.1 C33H5.1 Caenorhabditis elegans
WBGene00016371 C33H5.2 C33H5.2 Caenorhabditis elegans
WBGene00021722 srz-5 Y49F6B.11 Caenorhabditis elegans
WBGene00013472 Y68A4B.3 Y68A4B.3 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule