WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Differential expression was calculated by empirical Bayes method using the eBayes function, and control of FDR was employed as the multiple testing correction. Authors used cutoff of absolute log2 fold change greater than or equal to 1.5 AND p_value less than or equal to 0.05 to call differentially expressed genes. Description  Genes that showed differential expression in the comparison of germline-ablated animals fed on S. marcescens versus germline-ablated animals fed E. coli OP50.
Primary Identifier  WBPaper00041466:PP_S.marcescens_regulated Regulated By Treatment  Germline ablation

1 Anatomy Terms

Definition Name Synonym Primary Identifier
cell line which early in development becomes differentiated from the remaining somatic cell line, and alone has the potential to undergo meiosis and form gametes. germ line germline WBbt:0005784

177 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00089654 PPA00100 PPA00100 Pristionchus pacificus
WBGene00090048 Ppa-lev-8 PPA00494 Pristionchus pacificus
WBGene00090604 PPA01050 PPA01050 Pristionchus pacificus
WBGene00090685 PPA01131 PPA01131 Pristionchus pacificus
WBGene00090687 PPA01133 PPA01133 Pristionchus pacificus
WBGene00091651 PPA02097 PPA02097 Pristionchus pacificus
WBGene00091666 Ppa-pmp-5 PPA02112 Pristionchus pacificus
WBGene00091776 PPA02222 PPA02222 Pristionchus pacificus
WBGene00091933 PPA02379 PPA02379 Pristionchus pacificus
WBGene00092069 Ppa-strm-1 PPA02515 Pristionchus pacificus
WBGene00092403 Ppa-lpd-5 PPA02849 Pristionchus pacificus
WBGene00092534 PPA02980 PPA02980 Pristionchus pacificus
WBGene00092650 PPA03096 PPA03096 Pristionchus pacificus
WBGene00092683 PPA03129 PPA03129 Pristionchus pacificus
WBGene00092910 Ppa-elo-1.2 PPA03356 Pristionchus pacificus
WBGene00093371 PPA03817 PPA03817 Pristionchus pacificus
WBGene00093731 Ppa-idh-1 PPA04177 Pristionchus pacificus
WBGene00094738 PPA05184 PPA05184 Pristionchus pacificus
WBGene00094879 PPA05325 PPA05325 Pristionchus pacificus
WBGene00094897 PPA05343 PPA05343 Pristionchus pacificus
WBGene00095098 PPA05544 PPA05544 Pristionchus pacificus
WBGene00095174 PPA05620 PPA05620 Pristionchus pacificus
WBGene00095430 Ppa-hphd-1 PPA05876 Pristionchus pacificus
WBGene00095479 PPA05925 PPA05925 Pristionchus pacificus
WBGene00095483 PPA05929 PPA05929 Pristionchus pacificus
WBGene00095609 PPA06055 PPA06055 Pristionchus pacificus
WBGene00096193 PPA06639 PPA06639 Pristionchus pacificus
WBGene00096218 PPA06664 PPA06664 Pristionchus pacificus
WBGene00096333 PPA06779 PPA06779 Pristionchus pacificus
WBGene00096519 PPA06965 PPA06965 Pristionchus pacificus

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule