WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  A gene model was built based on the WS260 annotation. Tag counts for each gene were extracted from STAR aligned BAM files, anddifferential gene expression between N2 and mutant backgrounds was tested using DESeq2. A false discovery rate(FDR) < 0.01 and LFC > 0.5849 was used to define genes as upregulated, and FDR < 0.01 and LFC < -1 was used to define genes asdownregulated. Description  Transcripts that showed significantly decreased expression in lin-35(n745) comparing to in N2 animals at starved L1 larva stage.
Primary Identifier  WBPaper00062056:lin-35(n745)_downregulated

0 Anatomy Terms

189 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000210 asg-2 C53B7.4 Caenorhabditis elegans
WBGene00000214 asp-1 Y39B6A.20 Caenorhabditis elegans
WBGene00000215 asp-2 T18H9.2 Caenorhabditis elegans
WBGene00000216 asp-3 H22K11.1 Caenorhabditis elegans
WBGene00000399 cdh-7 R05H10.6 Caenorhabditis elegans
WBGene00000606 col-17 F11G11.10 Caenorhabditis elegans
WBGene00000618 col-41 T10B10.1 Caenorhabditis elegans
WBGene00000649 col-73 F11G11.12 Caenorhabditis elegans
WBGene00000665 col-90 C29E4.1 Caenorhabditis elegans
WBGene00000722 col-149 B0024.1 Caenorhabditis elegans
WBGene00000802 crt-1 Y38A10A.5 Caenorhabditis elegans
WBGene00000879 cyn-3 Y75B12B.5 Caenorhabditis elegans
WBGene00001066 dpy-4 Y41E3.2 Caenorhabditis elegans
WBGene00001067 dpy-5 F27C1.8 Caenorhabditis elegans
WBGene00001068 dpy-6 F16F9.2 Caenorhabditis elegans
WBGene00001070 dpy-8 C31H2.2 Caenorhabditis elegans
WBGene00001071 dpy-9 T21D12.2 Caenorhabditis elegans
WBGene00001074 dpy-13 F30B5.1 Caenorhabditis elegans
WBGene00001167 eef-2 F25H5.4 Caenorhabditis elegans
WBGene00001385 far-1 F02A9.2 Caenorhabditis elegans
WBGene00001386 far-2 F02A9.3 Caenorhabditis elegans
WBGene00001538 gcy-12 F08B1.2 Caenorhabditis elegans
WBGene00001754 gst-6 F11G11.3 Caenorhabditis elegans
WBGene00001785 gst-37 Y32G9A.1 Caenorhabditis elegans
WBGene00001881 his-7 F45F2.4 Caenorhabditis elegans
WBGene00002113 ins-30 ZC334.2 Caenorhabditis elegans
WBGene00002116 ins-33 W09C5.4 Caenorhabditis elegans
WBGene00002118 ins-35 K02E2.4 Caenorhabditis elegans
WBGene00003093 lys-4 F58B3.1 Caenorhabditis elegans
WBGene00003094 lys-5 F58B3.2 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003020 lin-35 C32F10.2 Caenorhabditis elegans

0 Regulated By Molecule