WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Differential expression analysis was performed using DESeq2 v1.6.3 in R version 3.2.3. All analyses were performed with genes that had average expression level above 1 RPKM (fragments per kilobase per million, as calculated by Cufflinks). Description  Transcripts that showed significantly decreased expression (fold change > 2, adjusted p-value < 0.05) in lsm-1(tm3585) injected with vector RNAi, comparing to in control animals (N2 injected with vector RNAi).
Primary Identifier  WBPaper00050193:lsm-1(tm3585)_downregulated_L3

0 Anatomy Terms

6 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003546 nas-28 F42A10.8 Caenorhabditis elegans
WBGene00005582 sri-70 Y61B8B.1 Caenorhabditis elegans
WBGene00005832 srw-85 C25F9.1 Caenorhabditis elegans
WBGene00018232 F40E3.5 F40E3.5 Caenorhabditis elegans
WBGene00019587 K09F6.4 K09F6.4 Caenorhabditis elegans
WBGene00013242 Y56A3A.30 Y56A3A.30 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The third stage larva. At 25 Centigrade, it ranges 32.5-40 hours after fertilization, 18.5-26 hours after hatch. L3 larva Ce WBls:0000035

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003076 lsm-1 F40F8.9 Caenorhabditis elegans

0 Regulated By Molecule