WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

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Expression Cluster :

Algorithm  Differentially upregulated geneswere determined on the basis of fold change comparedto both controls (> 3) and the value of a modified Wil-coxon rank test > 1.5 against both controls. The Wil-coxon coefficient was determined for each probeset asthe smallest expression value amongst pyoverdine treat-ment replicates divided by the highest expression valuein the control condition replicates. Description  Transcripts upregulated by 12h exposure to pyoverdine in liquid (as compared to solvent in liquid and untreated worms on agar plates). Upregulation was significant compared to both controls; fold changes shown are normalized to the solvent in liquid condition.
Primary Identifier  WBPaper00053827:pyoverdine_upregulated

0 Anatomy Terms

289 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000195 arr-1 F53H8.2 Caenorhabditis elegans
WBGene00000211 asm-1 B0252.2 Caenorhabditis elegans
WBGene00000224 atgp-1 F26D10.9 Caenorhabditis elegans
WBGene00000372 cyp-13A7 T10B9.10 Caenorhabditis elegans
WBGene00000443 ceh-20 F31E3.1 Caenorhabditis elegans
WBGene00000523 clc-2 C01C10.1 Caenorhabditis elegans
WBGene00000555 cnc-1 R09B5.2 Caenorhabditis elegans
WBGene00000556 cnc-2 R09B5.3 Caenorhabditis elegans
WBGene00000558 cnc-4 R09B5.9 Caenorhabditis elegans
WBGene00000560 cnc-6 Y46E12A.1 Caenorhabditis elegans
WBGene00000840 cul-5 ZK856.1 Caenorhabditis elegans
WBGene00000963 dhp-1 R06C7.3 Caenorhabditis elegans
WBGene00000969 dhs-5 F56D1.5 Caenorhabditis elegans
WBGene00000986 dhs-23 R08H2.1 Caenorhabditis elegans
WBGene00001158 ech-9 F01G10.3 Caenorhabditis elegans
WBGene00001160 efk-1 F42A10.4 Caenorhabditis elegans
WBGene00001178 egl-9 F22E12.4 Caenorhabditis elegans
WBGene00001262 emb-8 K10D2.6 Caenorhabditis elegans
WBGene00001388 far-4 F15B9.2 Caenorhabditis elegans
WBGene00001476 fmo-1 K08C7.2 Caenorhabditis elegans
WBGene00001479 fmo-4 F53F4.5 Caenorhabditis elegans
WBGene00001516 gap-2 ZK899.8 Caenorhabditis elegans
WBGene00001756 gst-8 F11G11.1 Caenorhabditis elegans
WBGene00001869 him-10 R12B2.4 Caenorhabditis elegans
WBGene00001875 his-1 T10C6.14 Caenorhabditis elegans
WBGene00001902 his-28 K06C4.2 Caenorhabditis elegans
WBGene00001993 hpd-1 T21C12.2 Caenorhabditis elegans
WBGene00001995 hpl-1 K08H2.6 Caenorhabditis elegans
WBGene00002013 hsp-12.6 F38E11.2 Caenorhabditis elegans
WBGene00002016 hsp-16.2 Y46H3A.3 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

0 Regulated By Gene

1 Regulated By Molecule

Name Primary Identifier
pyoverdin WBMol:00004761