WormMine: ExpressionCluster WBPaper00066447:Day8_vs_Day1_upregulated_intestine

• Algorithm: Differentially expressed miRNAs were identified using DEGseq based on unique molecular identifier (UMI). A minimum UMI sum of 10 in 3 replicates was set as the threshold of expression. MiRNAs with more than five reads were defined as expressed. Differential expression of miRNAs was analysed by t-test (P value < 0.05 and fold-change > 1.5 or < 0.67) after Box-Cox transformation. MiRNA targets were identified by TargetScanWorm (Release 6.2) and Pearson Correlation Coefficient smaller than -0.2.
• Description: Micro RNAs that showed significantly increased expression in day 8 adults comparing to in day 1 adults in intestine.
• Primary Identifier: WBPaper00066447:Day8_vs_Day1_upregulated_intestine

1 Anatomy Terms

Definition	Name	Synonym	Primary Identifier
A chain of very large cuboidal cells forming a wide central lumen in which food arrives from the posterior pharynx, is digested, and from which waste products proceed to the rectum. Intestinal rings form in groups of two and four cells surrounding the common lumen; thus the epithelium is only one cell deep at any point, with neighboring cells firmly secured to their neighbors by apical adherens junctions. These cells have very large nuclei and many large vacuoles, yolk granules, and other inclusions; the latter increase in number and electron density as the animal ages.	intestine	gut	WBbt:0005772

11 Genes

WormBase Gene ID	Gene Name	Sequence Name	Organism
WBGene00003039	mir-48	F56A12.3	Caenorhabditis elegans
WBGene00003262	mir-34	Y41G9A.7	Caenorhabditis elegans
WBGene00003299	mir-71	F16A11.4	Caenorhabditis elegans
WBGene00003300	mir-72	F53G2.9	Caenorhabditis elegans
WBGene00003305	mir-77	T21B4.13	Caenorhabditis elegans
WBGene00003286	mir-58.1	Y67D8A.4	Caenorhabditis elegans
WBGene00003281	mir-53	F36H1.8	Caenorhabditis elegans
WBGene00003342	mir-248	AH9.5	Caenorhabditis elegans
WBGene00003333	mir-239.2	C34E11.6	Caenorhabditis elegans
WBGene00003332	mir-239.1	C34E11.5	Caenorhabditis elegans
WBGene00003282	mir-54	F09A5.5	Caenorhabditis elegans

2 Life Stages

Remark	Definition	Other Name	Public Name	Primary Identifier
	At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage.		1-day post-L4 adult hermaphrodite Ce	WBls:0000064
	At 20 Centigrade: 8-9 days after L4-adult molt. 11-12 days after first cleavage.		8-days post-L4 adult hermaphrodite Ce	WBls:0000672

0 Processes

0 Regulated By Gene

0 Regulated By Molecule