WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Differential expression was calculated by empirical Bayes method using the eBayes function, and control of FDR was employed as the multiple testing correction. Authors used cutoff of absolute log2 fold change greater than or equal to 1.5 AND p_value less than or equal to 0.05 to call differentially expressed genes. Description  Germline expressed genes in P.pacificus are also significantly enriched in the annotated\/validated operons conserved across P.pacificus and C.elegans.
Primary Identifier  WBPaper00045473:PP_Germline_Conserved_Operon

1 Anatomy Terms

Definition Name Synonym Primary Identifier
cell line which early in development becomes differentiated from the remaining somatic cell line, and alone has the potential to undergo meiosis and form gametes. germ line germline WBbt:0005784

30 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00090521 PPA00967 PPA00967 Pristionchus pacificus
WBGene00090522 Ppa-pph-6 PPA00968 Pristionchus pacificus
WBGene00097126 Ppa-tsg-101 PPA07572 Pristionchus pacificus
WBGene00097784 PPA08230 PPA08230 Pristionchus pacificus
WBGene00097785 Ppa-dhps-1 PPA08231 Pristionchus pacificus
WBGene00098396 Ppa-trxr-1 PPA08842 Pristionchus pacificus
WBGene00098397 PPA08843 PPA08843 Pristionchus pacificus
WBGene00098847 Ppa-lin-53 PPA09293 Pristionchus pacificus
WBGene00101426 Ppa-rbm-28 PPA11872 Pristionchus pacificus
WBGene00102297 Ppa-dnj-22 PPA12743 Pristionchus pacificus
WBGene00103615 Ppa-dpy-30 PPA14061 Pristionchus pacificus
WBGene00105230 Ppa-mrps-22.2 PPA15676 Pristionchus pacificus
WBGene00107896 Ppa-sec-20 PPA18342 Pristionchus pacificus
WBGene00110596 Ppa-crn-3 PPA21042 Pristionchus pacificus
WBGene00114720 PPA25166 PPA25166 Pristionchus pacificus
WBGene00114746 PPA25192 PPA25192 Pristionchus pacificus
WBGene00115041 Ppa-tbg-1 PPA25487 Pristionchus pacificus
WBGene00118510 Ppa-mrpl-4 PPA28956 Pristionchus pacificus
WBGene00118511 Ppa-mrps-2 PPA28957 Pristionchus pacificus
WBGene00275866 PPA37497 PPA37497 Pristionchus pacificus
WBGene00278533 PPA40164 PPA40164 Pristionchus pacificus
WBGene00278534 Ppa-exos-3 PPA40165 Pristionchus pacificus
WBGene00304581 Ppa-ulp-3 PPA46802 Pristionchus pacificus
WBGene00306059 Ppa-let-502 PPA47417 Pristionchus pacificus
WBGene00103099 PPA13545 PPA13545 Pristionchus pacificus
WBGene00104903 PPA15349 PPA15349 Pristionchus pacificus
WBGene00112389 PPA22835 PPA22835 Pristionchus pacificus
WBGene00114718 Ppa-zyg-9 PPA25164 Pristionchus pacificus
WBGene00099305 PPA09751 PPA09751 Pristionchus pacificus
WBGene00304947 PPA47087 PPA47087 Pristionchus pacificus

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule