WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 114, C32F10.4-D1086.2, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:C32F10.4-D1086.2

0 Anatomy Terms

118 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000169 aqp-1 F32A5.5 Caenorhabditis elegans
WBGene00000233 avr-15 R11G10.1 Caenorhabditis elegans
WBGene00000787 cps-6 C41D11.8 Caenorhabditis elegans
WBGene00001397 fat-5 W06D12.3 Caenorhabditis elegans
WBGene00001439 fkh-7 F26D12.1 Caenorhabditis elegans
WBGene00001500 ftn-1 C54F6.14 Caenorhabditis elegans
WBGene00001763 gst-15 F37B1.4 Caenorhabditis elegans
WBGene00001852 hil-1 C30G7.1 Caenorhabditis elegans
WBGene00002012 hsp-12.3 F38E11.1 Caenorhabditis elegans
WBGene00002013 hsp-12.6 F38E11.2 Caenorhabditis elegans
WBGene00003473 mtl-1 K11G9.6 Caenorhabditis elegans
WBGene00003699 nhr-109 T12C9.5 Caenorhabditis elegans
WBGene00003778 nnt-1 C15H9.1 Caenorhabditis elegans
WBGene00004249 pvf-1 Y39A3CL.6 Caenorhabditis elegans
WBGene00004811 skr-5 F47H4.10 Caenorhabditis elegans
WBGene00004858 sma-4 R12B2.1 Caenorhabditis elegans
WBGene00004932 sod-3 C08A9.1 Caenorhabditis elegans
WBGene00006611 tre-5 C23H3.7 Caenorhabditis elegans
WBGene00007414 C07E3.3 C07E3.3 Caenorhabditis elegans
WBGene00007452 C08F11.3 C08F11.3 Caenorhabditis elegans
WBGene00007525 C11G10.1 C11G10.1 Caenorhabditis elegans
WBGene00007550 C13C4.6 C13C4.6 Caenorhabditis elegans
WBGene00007919 cup-16 C34C6.7 Caenorhabditis elegans
WBGene00007973 C36B1.6 C36B1.6 Caenorhabditis elegans
WBGene00008483 E04D5.4 E04D5.4 Caenorhabditis elegans
WBGene00009093 F23H12.3 F23H12.3 Caenorhabditis elegans
WBGene00009291 clec-264 F31D4.4 Caenorhabditis elegans
WBGene00009663 hda-5 F43G6.11 Caenorhabditis elegans
WBGene00009805 F47B8.4 F47B8.4 Caenorhabditis elegans
WBGene00009895 scl-2 F49E11.10 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule