WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 123, F14F7.4_16243-ZK353.3, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:F14F7.4_16243-ZK353.3

0 Anatomy Terms

103 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000723 col-150 B0024.2 Caenorhabditis elegans
WBGene00001869 him-10 R12B2.4 Caenorhabditis elegans
WBGene00003906 paf-1 W03G9.6 Caenorhabditis elegans
WBGene00004036 plc-1 F31B12.1 Caenorhabditis elegans
WBGene00007382 C06C6.8 C06C6.8 Caenorhabditis elegans
WBGene00007383 C06C6.9 C06C6.9 Caenorhabditis elegans
WBGene00008811 F14F7.4 F14F7.4 Caenorhabditis elegans
WBGene00008854 F15D3.4 F15D3.4 Caenorhabditis elegans
WBGene00009114 paml-2 F25D7.5 Caenorhabditis elegans
WBGene00009491 F36G9.15 F36G9.15 Caenorhabditis elegans
WBGene00009592 F40F12.3 F40F12.3 Caenorhabditis elegans
WBGene00009704 F44F4.9 F44F4.9 Caenorhabditis elegans
WBGene00010014 F54B3.2 F54B3.2 Caenorhabditis elegans
WBGene00010184 F57A10.2 F57A10.2 Caenorhabditis elegans
WBGene00010692 K08H2.5 K08H2.5 Caenorhabditis elegans
WBGene00010825 M01G12.14 M01G12.14 Caenorhabditis elegans
WBGene00011187 R10D12.6 R10D12.6 Caenorhabditis elegans
WBGene00011469 dylt-3 T05C12.5 Caenorhabditis elegans
WBGene00012172 W01B6.5 W01B6.5 Caenorhabditis elegans
WBGene00012174 W01B6.8 W01B6.8 Caenorhabditis elegans
WBGene00012636 Y38H8A.2 Y38H8A.2 Caenorhabditis elegans
WBGene00012721 Y39E4B.13 Y39E4B.13 Caenorhabditis elegans
WBGene00012849 ttr-13 Y44A6B.4 Caenorhabditis elegans
WBGene00013773 Y116A8A.2 Y116A8A.2 Caenorhabditis elegans
WBGene00013810 Y116A8C.37 Y116A8C.37 Caenorhabditis elegans
WBGene00013868 ZC373.3 ZC373.3 Caenorhabditis elegans
WBGene00014128 ZK892.4 ZK892.4 Caenorhabditis elegans
WBGene00015690 C10G11.10 C10G11.10 Caenorhabditis elegans
WBGene00016083 C25A8.2 C25A8.2 Caenorhabditis elegans
WBGene00016168 C27F2.6 C27F2.6 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule