WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  For differential gene expression analysis, sets of independent mutant and control mapped reads (e.g biological replicates) were used in cuffdiff analysis. The cutoff of FDR(q value)=0.05 was used as a significance cutoff for all the analyses. Description  Transcripts that showed significantly decreased expression in fed mes-2(RNAi) comparing to in starved wild type, in primordial germ cells (PGCs) at L1 larva, according to Truseq.
Primary Identifier  WBPaper00053321:mes-2(RNAi)_downregulated_fed-L1_Truseq

1 Anatomy Terms

Definition Name Synonym Primary Identifier
member of a set of two cells that generate exclusively sperm and ovum. germline precursor cell PGC WBbt:0006849

14 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003941 pbo-1 Y71H2AL.1 Caenorhabditis elegans
WBGene00004249 pvf-1 Y39A3CL.6 Caenorhabditis elegans
WBGene00008890 ser-5 F16D3.7 Caenorhabditis elegans
WBGene00012703 nhr-145 Y39B6A.47 Caenorhabditis elegans
WBGene00015268 fbxo-11.2 BE0003N10.3 Caenorhabditis elegans
WBGene00017265 snpc-1.3 F08F3.9 Caenorhabditis elegans
WBGene00021338 Y34F4.3 Y34F4.3 Caenorhabditis elegans
WBGene00021374 Y37E11B.1 Y37E11B.1 Caenorhabditis elegans
WBGene00021858 Y54F10BM.3 Y54F10BM.3 Caenorhabditis elegans
WBGene00022070 Y67D8C.6 Y67D8C.6 Caenorhabditis elegans
WBGene00015096 B0261.8 B0261.8 Caenorhabditis elegans
WBGene00013162 Y53F4B.16 Y53F4B.16 Caenorhabditis elegans
WBGene00021799 Y53G8AL.1 Y53G8AL.1 Caenorhabditis elegans
WBGene00021942 madf-1 Y55F3BR.5 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024

0 Processes

0 Regulated By Gene

0 Regulated By Molecule