WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  To identify the genes that show consistent and significant expression changes across the independent biological replicates of hcf-1(-) or sir-2.1(O/E), authors used Significance Analysis of Microarrays (SAM) with a stringent criteria of expected false discovery rate (FDR) set at 0%. Description  Genes downregulated in hcf-1(-), downregulated in sir-2.1(O/E) and upregulated in daf-2(-).
Primary Identifier  WBPaper00040184:hcf-1down_sir-2.1down_daf-2up
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0 Anatomy Terms

12 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000212 asm-2 ZK455.4 Caenorhabditis elegans
WBGene00000653 col-77 M195.1 Caenorhabditis elegans
WBGene00000660 col-85 T21B4.2 Caenorhabditis elegans
WBGene00000667 col-92 W05B2.6 Caenorhabditis elegans
WBGene00000668 col-93 W05B2.5 Caenorhabditis elegans
WBGene00000738 col-165 F14H12.1 Caenorhabditis elegans
WBGene00003590 nex-3 C28A5.3 Caenorhabditis elegans
WBGene00003958 pcp-3 F23B2.11 Caenorhabditis elegans
WBGene00011105 R07E3.4 R07E3.4 Caenorhabditis elegans
WBGene00020788 nep-22 T25B6.2 Caenorhabditis elegans
WBGene00018523 lact-1 F46H5.8 Caenorhabditis elegans
WBGene00001703 grd-14 T01B10.2 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

3 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000898 daf-2 Y55D5A.5 Caenorhabditis elegans
WBGene00001827 hcf-1 C46A5.9 Caenorhabditis elegans
WBGene00004800 sir-2.1 R11A8.4 Caenorhabditis elegans

0 Regulated By Molecule