WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 75, Y46G5A.28-Y44A6C.2, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:Y46G5A.28-Y44A6C.2

0 Anatomy Terms

30 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000814 csn-2 B0025.2 Caenorhabditis elegans
WBGene00003983 pes-10 Y46G5A.27 Caenorhabditis elegans
WBGene00004802 sir-2.3 F46G10.3 Caenorhabditis elegans
WBGene00009658 pap-3 F43G6.5 Caenorhabditis elegans
WBGene00011791 pap-2 T15H9.6 Caenorhabditis elegans
WBGene00012916 Y46G5A.28 Y46G5A.28 Caenorhabditis elegans
WBGene00013799 athp-3 Y116A8C.22 Caenorhabditis elegans
WBGene00017135 EEED8.4 EEED8.4 Caenorhabditis elegans
WBGene00017140 EEED8.12 EEED8.12 Caenorhabditis elegans
WBGene00019584 set-12 K09F5.5 Caenorhabditis elegans
WBGene00019814 R02C2.1 R02C2.1 Caenorhabditis elegans
WBGene00019815 kin-34 R02C2.2 Caenorhabditis elegans
WBGene00020354 sgnh-1 T08B6.5 Caenorhabditis elegans
WBGene00020665 T22B2.1 T22B2.1 Caenorhabditis elegans
WBGene00022638 scl-27 ZK6.3 Caenorhabditis elegans
WBGene00045498 F56F4.8 F56F4.8 Caenorhabditis elegans
WBGene00013722 Y106G6H.10 Y106G6H.10 Caenorhabditis elegans
WBGene00014789 F59C6.10 F59C6.10 Caenorhabditis elegans
WBGene00008157 C47F8.1 C47F8.1 Caenorhabditis elegans
WBGene00021966 Y57G7A.2 Y57G7A.2 Caenorhabditis elegans
WBGene00044371 ZC239.20 ZC239.20 Caenorhabditis elegans
WBGene00007341 C05D12.4 C05D12.4 Caenorhabditis elegans
WBGene00007342 C05D12.5 C05D12.5 Caenorhabditis elegans
WBGene00012581 Y38E10A.3 Y38E10A.3 Caenorhabditis elegans
WBGene00017848 F27B3.6 F27B3.6 Caenorhabditis elegans
WBGene00010149 F56D5.5 F56D5.5 Caenorhabditis elegans
WBGene00077663 F55C9.14 F55C9.14 Caenorhabditis elegans
WBGene00012851 Y44A6C.2 Y44A6C.2 Caenorhabditis elegans
WBGene00015624 lelo-3 C09B8.5 Caenorhabditis elegans
WBGene00014143 ZK899.5 ZK899.5 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule