WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  DESeq and EdgeR were used. A threshold of 1.5 log2 fold change and a p value <10 % were applied. let-418: wild-type; let-418(RNAi)-treated embryos; chd-3: chd-3(eh4);controlGFP(RNAi)-treated embryos; chd-3_let-418: chd-3(eh4); let-418(RNAi)-treated embryos. All fold changes are calculated versus wild-type;control(RNAi)-treated embryos. 1h and 3h correspond to the 24- and 100-cell stages, respectively. Description  Transcripts that showed significantly decreased expression in 24-cell stage embryo of let-418(RNAi) animals, comparing to in control RNAi (with gfp control vector) animals.
Primary Identifier  WBPaper00050163:let-418(RNAi)_downregulated_24-cell-embryo
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0 Anatomy Terms

78 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000391 cdd-1 C47D2.2 Caenorhabditis elegans
WBGene00000522 clc-1 C09F12.1 Caenorhabditis elegans
WBGene00000712 col-139 F41F3.4 Caenorhabditis elegans
WBGene00000783 cpr-3 T10H4.12 Caenorhabditis elegans
WBGene00000845 cup-4 C02C2.3 Caenorhabditis elegans
WBGene00001449 flp-6 F07D3.2 Caenorhabditis elegans
WBGene00001500 ftn-1 C54F6.14 Caenorhabditis elegans
WBGene00001770 gst-22 F21H7.1 Caenorhabditis elegans
WBGene00001841 hen-1 C36B7.7 Caenorhabditis elegans
WBGene00001858 hil-7 C01B10.5 Caenorhabditis elegans
WBGene00002234 kqt-2 M60.5 Caenorhabditis elegans
WBGene00002637 let-418 F26F12.7 Caenorhabditis elegans
WBGene00003528 nas-9 C37H5.9 Caenorhabditis elegans
WBGene00003720 nhr-130 T01G6.8 Caenorhabditis elegans
WBGene00003766 nlp-28 B0213.3 Caenorhabditis elegans
WBGene00003997 pgp-3 ZK455.7 Caenorhabditis elegans
WBGene00005657 srr-6 C13D9.1 Caenorhabditis elegans
WBGene00007459 C08F11.12 C08F11.12 Caenorhabditis elegans
WBGene00007525 C11G10.1 C11G10.1 Caenorhabditis elegans
WBGene00008040 ttr-5 C40H1.5 Caenorhabditis elegans
WBGene00008296 cdr-2 C54D10.1 Caenorhabditis elegans
WBGene00008451 cest-3 E01G6.3 Caenorhabditis elegans
WBGene00008542 scav-6 F07A5.3 Caenorhabditis elegans
WBGene00008850 F15B9.6 F15B9.6 Caenorhabditis elegans
WBGene00009431 dct-17 F35E12.7 Caenorhabditis elegans
WBGene00010005 cnc-7 F53H2.2 Caenorhabditis elegans
WBGene00010225 ttr-31 F58A3.5 Caenorhabditis elegans
WBGene00010658 K08D8.4 K08D8.4 Caenorhabditis elegans
WBGene00011190 swt-6 R10D12.9 Caenorhabditis elegans
WBGene00011330 T01D3.6 T01D3.6 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
Levin M, Hashimshony T, Wagner F, Yanai I. Developmental milestones punctuate gene expression in the Caenorhabditis embryo. Dev Cell. 2012 May 15;22(5):1101-8. Epub 2012 May 3. PubMed PMID: 22560298. Supplementary table 1. Fourth cleavage of the AB lineage. Contains 24 cells. 24-cell embryo Ce WBls:0000085

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002637 let-418 F26F12.7 Caenorhabditis elegans

0 Regulated By Molecule