WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Differentially expressed genes between wild type and knockouts were explored using DESeq2 R package (v.1.20.0) considering a threshold of adjusted p value < 0.01. Description  Transcripts that showed significantly increased expression in ikb-1(nr2027) animals at L1 larva stage, comparing to in N2 animals.
Primary Identifier  WBPaper00060445:ikb-1(nr2027)_upregulated_L1
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0 Anatomy Terms

289 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000412 cdr-1 F35E8.11 Caenorhabditis elegans
WBGene00000556 cnc-2 R09B5.3 Caenorhabditis elegans
WBGene00000558 cnc-4 R09B5.9 Caenorhabditis elegans
WBGene00000560 cnc-6 Y46E12A.1 Caenorhabditis elegans
WBGene00000671 col-96 Y41C4A.19 Caenorhabditis elegans
WBGene00000675 col-101 K02D7.3 Caenorhabditis elegans
WBGene00000682 col-108 Y41D4A.2 Caenorhabditis elegans
WBGene00000783 cpr-3 T10H4.12 Caenorhabditis elegans
WBGene00000977 dhs-14 R05D8.8 Caenorhabditis elegans
WBGene00000982 dhs-19 T11F9.11 Caenorhabditis elegans
WBGene00000986 dhs-23 R08H2.1 Caenorhabditis elegans
WBGene00001241 elo-3 D2024.3 Caenorhabditis elegans
WBGene00001387 far-3 F15B9.1 Caenorhabditis elegans
WBGene00001397 fat-5 W06D12.3 Caenorhabditis elegans
WBGene00001755 gst-7 F11G11.2 Caenorhabditis elegans
WBGene00001760 gst-12 F37B1.2 Caenorhabditis elegans
WBGene00001769 gst-21 ZK697.6 Caenorhabditis elegans
WBGene00001773 gst-25 F37F2.3 Caenorhabditis elegans
WBGene00001783 gst-35 Y1H11.2 Caenorhabditis elegans
WBGene00001981 hnd-1 C44C10.8 Caenorhabditis elegans
WBGene00002016 hsp-16.2 Y46H3A.3 Caenorhabditis elegans
WBGene00002018 hsp-16.41 Y46H3A.2 Caenorhabditis elegans
WBGene00002043 hyl-1 C09G4.1 Caenorhabditis elegans
WBGene00002260 lbp-8 T22G5.6 Caenorhabditis elegans
WBGene00002270 lec-7 R07B1.2 Caenorhabditis elegans
WBGene00002274 lec-11 F38A5.3 Caenorhabditis elegans
WBGene00002276 lem-3 F42H11.2 Caenorhabditis elegans
WBGene00003092 lys-3 Y22F5A.6 Caenorhabditis elegans
WBGene00003093 lys-4 F58B3.1 Caenorhabditis elegans
WBGene00003099 lys-10 F17E9.11 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002069 ikb-1 C04F12.3 Caenorhabditis elegans

0 Regulated By Molecule