WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Differentially expressed genes between wild type and knockouts were explored using DESeq2 R package (v.1.20.0) considering a threshold of adjusted p value < 0.01. Description  Transcripts that showed significantly decreased expression in nfki-1(cer1);ikb-1(nr2027) animals at L4 larva stage, comparing to in N2 animals.
Primary Identifier  WBPaper00060445:nfki-1(cer1)_ikb-1(nr2027)_downregulated_L4
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0 Anatomy Terms

218 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000220 atf-2 K08F8.2 Caenorhabditis elegans
WBGene00000251 bli-1 C09G5.6 Caenorhabditis elegans
WBGene00000399 cdh-7 R05H10.6 Caenorhabditis elegans
WBGene00000402 cdh-10 C45G7.5 Caenorhabditis elegans
WBGene00000593 col-2 W01B6.7 Caenorhabditis elegans
WBGene00000612 col-35 C15A11.1 Caenorhabditis elegans
WBGene00000613 col-36 C27H5.5 Caenorhabditis elegans
WBGene00000614 col-37 ZK863.2 Caenorhabditis elegans
WBGene00000617 col-40 T13B5.4 Caenorhabditis elegans
WBGene00000623 col-46 Y18H1A.13 Caenorhabditis elegans
WBGene00000624 col-47 Y18H1A.12 Caenorhabditis elegans
WBGene00000627 col-50 T28F2.6 Caenorhabditis elegans
WBGene00000628 col-51 T28F2.8 Caenorhabditis elegans
WBGene00000659 col-84 K12D12.3 Caenorhabditis elegans
WBGene00000660 col-85 T21B4.2 Caenorhabditis elegans
WBGene00000676 col-102 C18H7.3 Caenorhabditis elegans
WBGene00000688 col-114 D2024.8 Caenorhabditis elegans
WBGene00000702 col-128 F12F6.9 Caenorhabditis elegans
WBGene00000731 col-158 D2023.7 Caenorhabditis elegans
WBGene00000756 col-183 F02D10.1 Caenorhabditis elegans
WBGene00000851 cut-1 C47G2.1 Caenorhabditis elegans
WBGene00000870 cyd-1 Y38F1A.5 Caenorhabditis elegans
WBGene00001063 dpy-1 M01E10.2 Caenorhabditis elegans
WBGene00001064 dpy-2 T14B4.6 Caenorhabditis elegans
WBGene00001065 dpy-3 EGAP7.1 Caenorhabditis elegans
WBGene00001068 dpy-6 F16F9.2 Caenorhabditis elegans
WBGene00001069 dpy-7 F46C8.6 Caenorhabditis elegans
WBGene00001070 dpy-8 C31H2.2 Caenorhabditis elegans
WBGene00001071 dpy-9 T21D12.2 Caenorhabditis elegans
WBGene00001072 dpy-10 T14B4.7 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038

0 Processes

2 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002069 ikb-1 C04F12.3 Caenorhabditis elegans
WBGene00007877 nfki-1 C33A11.1 Caenorhabditis elegans

0 Regulated By Molecule