WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  To identify the genes that show consistent and significant expression changes across the independent biological replicates of hcf-1(-) or sir-2.1(O/E), authors used Significance Analysis of Microarrays (SAM) with a stringent criteria of expected false discovery rate (FDR) set at 0%. Description  Genes upregulated in hcf-1(-), downregulated in sir-2.1(O/E) and no change in daf-2(-).
Primary Identifier  WBPaper00040184:hcf-1up_sir-2.1down_daf-2nc
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0 Anatomy Terms

39 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000512 ckb-2 B0285.9 Caenorhabditis elegans
WBGene00000684 col-110 F19C7.7 Caenorhabditis elegans
WBGene00000963 dhp-1 R06C7.3 Caenorhabditis elegans
WBGene00001451 flp-8 F31F6.4 Caenorhabditis elegans
WBGene00001460 flp-17 C52D10.11 Caenorhabditis elegans
WBGene00003648 nhr-58 R11G11.2 Caenorhabditis elegans
WBGene00003654 nhr-64 C45E1.1 Caenorhabditis elegans
WBGene00003745 nlp-7 F18E9.2 Caenorhabditis elegans
WBGene00003771 nlp-33 T19C4.7 Caenorhabditis elegans
WBGene00004857 sma-3 R13F6.9 Caenorhabditis elegans
WBGene00006843 unc-119 M142.1 Caenorhabditis elegans
WBGene00008027 scl-5 C39E9.2 Caenorhabditis elegans
WBGene00009029 F21H7.3 F21H7.3 Caenorhabditis elegans
WBGene00009896 scl-3 F49E11.11 Caenorhabditis elegans
WBGene00011185 R10D12.1 R10D12.1 Caenorhabditis elegans
WBGene00014700 C37A5.6 C37A5.6 Caenorhabditis elegans
WBGene00015480 C05D10.4 C05D10.4 Caenorhabditis elegans
WBGene00016953 C55C3.3 C55C3.3 Caenorhabditis elegans
WBGene00017702 malt-1 F22D3.6 Caenorhabditis elegans
WBGene00018823 F54E2.1 F54E2.1 Caenorhabditis elegans
WBGene00018971 clec-67 F56D6.2 Caenorhabditis elegans
WBGene00019105 asp-8 F59D6.3 Caenorhabditis elegans
WBGene00021503 ctsa-4.2 Y40D12A.2 Caenorhabditis elegans
WBGene00021135 W10G11.2 W10G11.2 Caenorhabditis elegans
WBGene00021136 W10G11.3 W10G11.3 Caenorhabditis elegans
WBGene00018018 F33G12.6 F33G12.6 Caenorhabditis elegans
WBGene00008862 F15D4.5 F15D4.5 Caenorhabditis elegans
WBGene00016522 fbxa-38 C39B5.4 Caenorhabditis elegans
WBGene00016027 C23H5.8 C23H5.8 Caenorhabditis elegans
WBGene00021875 Y54G2A.10 Y54G2A.10 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

2 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001827 hcf-1 C46A5.9 Caenorhabditis elegans
WBGene00004800 sir-2.1 R11A8.4 Caenorhabditis elegans

0 Regulated By Molecule