WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 79, clec-94-Y110A2AL.7, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:clec-94-Y110A2AL.7

0 Anatomy Terms

66 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003536 nas-17 K03B8.2 Caenorhabditis elegans
WBGene00003538 nas-19 K03B8.5 Caenorhabditis elegans
WBGene00003543 nas-24 F20G2.4 Caenorhabditis elegans
WBGene00008029 scl-7 C39E9.5 Caenorhabditis elegans
WBGene00008030 scl-8 C39E9.6 Caenorhabditis elegans
WBGene00009890 scl-9 F49E11.4 Caenorhabditis elegans
WBGene00010715 K09C8.2 K09C8.2 Caenorhabditis elegans
WBGene00011724 scl-18 T12A7.3 Caenorhabditis elegans
WBGene00011929 T22G5.1 T22G5.1 Caenorhabditis elegans
WBGene00012475 Y18D10A.2 Y18D10A.2 Caenorhabditis elegans
WBGene00017183 scl-15 F02E11.5 Caenorhabditis elegans
WBGene00017791 try-8 F25E5.10 Caenorhabditis elegans
WBGene00019646 K11D12.6 K11D12.6 Caenorhabditis elegans
WBGene00020179 T02H6.9 T02H6.9 Caenorhabditis elegans
WBGene00022282 Y74C10AR.2 Y74C10AR.2 Caenorhabditis elegans
WBGene00016459 C35E7.7 C35E7.7 Caenorhabditis elegans
WBGene00013125 clec-92 Y52B11A.5 Caenorhabditis elegans
WBGene00013928 clec-94 ZK39.3 Caenorhabditis elegans
WBGene00013927 clec-95 ZK39.2 Caenorhabditis elegans
WBGene00013933 clec-99 ZK39.8 Caenorhabditis elegans
WBGene00012502 clec-107 Y26D4A.4 Caenorhabditis elegans
WBGene00012504 clec-108 Y26D4A.6 Caenorhabditis elegans
WBGene00010578 K04H8.3 K04H8.3 Caenorhabditis elegans
WBGene00018820 F54D12.7 F54D12.7 Caenorhabditis elegans
WBGene00018379 F43C11.2 F43C11.2 Caenorhabditis elegans
WBGene00018378 F43C11.1 F43C11.1 Caenorhabditis elegans
WBGene00019688 K12H6.8 K12H6.8 Caenorhabditis elegans
WBGene00022444 Y110A2AL.7 Y110A2AL.7 Caenorhabditis elegans
WBGene00021289 Y25C1A.2 Y25C1A.2 Caenorhabditis elegans
WBGene00015856 C16C8.19 C16C8.19 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule