WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  To identify the genes that show consistent and significant expression changes across the independent biological replicates of hcf-1(-) or sir-2.1(O/E), authors used Significance Analysis of Microarrays (SAM) with a stringent criteria of expected false discovery rate (FDR) set at 0%. Description  Genes with no change in hcf-1(-), downregulated in sir-2.1(O/E) and downregulated in daf-2(-).
Primary Identifier  WBPaper00040184:hcf-1nc_sir-2.1down_daf-2down
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0 Anatomy Terms

12 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000988 dhs-25 F09E10.3 Caenorhabditis elegans
WBGene00003727 nhr-137 C56E10.4 Caenorhabditis elegans
WBGene00007507 C10C5.3 C10C5.3 Caenorhabditis elegans
WBGene00007509 C10C5.5 C10C5.5 Caenorhabditis elegans
WBGene00010128 F55G11.8 F55G11.8 Caenorhabditis elegans
WBGene00013905 ugt-4 ZC455.5 Caenorhabditis elegans
WBGene00019738 clec-265 M02F4.7 Caenorhabditis elegans
WBGene00009375 arcp-1 F34D10.6 Caenorhabditis elegans
WBGene00010907 M88.4 M88.4 Caenorhabditis elegans
WBGene00018062 F35F10.13 F35F10.13 Caenorhabditis elegans
WBGene00008392 D1086.5 D1086.5 Caenorhabditis elegans
WBGene00020630 T20F7.1 T20F7.1 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

2 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000898 daf-2 Y55D5A.5 Caenorhabditis elegans
WBGene00004800 sir-2.1 R11A8.4 Caenorhabditis elegans

0 Regulated By Molecule