WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 122, C03B8.2-C04C3.4, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:C03B8.2-C04C3.4

0 Anatomy Terms

25 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000444 ceh-21 T26C11.6 Caenorhabditis elegans
WBGene00000864 cya-2 F59H6.7 Caenorhabditis elegans
WBGene00003224 mes-6 C09G4.5 Caenorhabditis elegans
WBGene00011591 T07F10.5 T07F10.5 Caenorhabditis elegans
WBGene00012704 mlt-3 Y39C12A.1 Caenorhabditis elegans
WBGene00017259 F08F1.9 F08F1.9 Caenorhabditis elegans
WBGene00022651 ZK84.4 ZK84.4 Caenorhabditis elegans
WBGene00020345 T08B2.4 T08B2.4 Caenorhabditis elegans
WBGene00015228 B0511.2 B0511.2 Caenorhabditis elegans
WBGene00014916 fbxa-124 Y53C10A.7 Caenorhabditis elegans
WBGene00012485 fbxa-121 Y18D10A.18 Caenorhabditis elegans
WBGene00008130 fbxa-140 C47B2.1 Caenorhabditis elegans
WBGene00020028 R12C12.8 R12C12.8 Caenorhabditis elegans
WBGene00021040 W05G11.2 W05G11.2 Caenorhabditis elegans
WBGene00044412 F40H6.6 F40H6.6 Caenorhabditis elegans
WBGene00015385 C03B8.2 C03B8.2 Caenorhabditis elegans
WBGene00014024 ZK637.4 ZK637.4 Caenorhabditis elegans
WBGene00015414 C04C3.4 C04C3.4 Caenorhabditis elegans
WBGene00019789 M116.2 M116.2 Caenorhabditis elegans
WBGene00011599 T07G12.8 T07G12.8 Caenorhabditis elegans
WBGene00007870 C32H11.7 C32H11.7 Caenorhabditis elegans
WBGene00044279 grl-32 T24A6.21 Caenorhabditis elegans
WBGene00007085 AH10.4 AH10.4 Caenorhabditis elegans
WBGene00008517 F02C12.3 F02C12.3 Caenorhabditis elegans
WBGene00014069 ZK678.3 ZK678.3 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule