WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  DEGseq and GFOLD were used to analyze miRNAs expression. Authors chose miRNAs which had more than two-fold difference in expression (P < 0.001, q < 0.01 of Storey) from DEGseq, and miRNAs which had more than two-fold difference in expression (GFOLD score > 0 for up-regulation and GFOLD score < 0 for down-regulation) from GFOLD outcomes. Then authors obtained the intersection of up-regulated miRNAs and down-regulated miRNAs for each stage from the chosen miRNAs, respectively. Description  miRNA with decreased expression in N2 L2 larva comparing to in N2 L1 larva.
Primary Identifier  WBPaper00045316:miRNA_N2_L2_vs_L1_downregulated_adult

0 Anatomy Terms

15 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003299 mir-71 F16A11.4 Caenorhabditis elegans
WBGene00003300 mir-72 F53G2.9 Caenorhabditis elegans
WBGene00003288 mir-60 C32D5.13 Caenorhabditis elegans
WBGene00003269 mir-41 Y62F5A.8 Caenorhabditis elegans
WBGene00014534 mir-355 T27D12.5 Caenorhabditis elegans
WBGene00003273 mir-45 ZK930.11 Caenorhabditis elegans
WBGene00003270 mir-42 ZK930.8 Caenorhabditis elegans
WBGene00003272 mir-44 ZK930.10 Caenorhabditis elegans
WBGene00003318 mir-90 K01F9.1 Caenorhabditis elegans
WBGene00003311 mir-83 C06A6.6 Caenorhabditis elegans
WBGene00003279 mir-51 F36H1.7 Caenorhabditis elegans
WBGene00003319 mir-124 C29E6.7 Caenorhabditis elegans
WBGene00045354 mir-796 C14E2.8 Caenorhabditis elegans
WBGene00003302 mir-74 T24D8.7 Caenorhabditis elegans
WBGene00023456 mir-360 Y23B4A.3 Caenorhabditis elegans

3 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The second stage larva. At 25 Centigrade, it ranges 25.5-32.5 hours after fertilization, 11.5-18.5 hours after hatch. L2 larva Ce WBls:0000027
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

0 Regulated By Gene

0 Regulated By Molecule