WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  DEGseq and GFOLD were used to analyze miRNAs expression. Authors chose miRNAs which had more than two-fold difference in expression (P < 0.001, q < 0.01 of Storey) from DEGseq, and miRNAs which had more than two-fold difference in expression (GFOLD score > 0 for up-regulation and GFOLD score < 0 for down-regulation) from GFOLD outcomes. Then authors obtained the intersection of up-regulated miRNAs and down-regulated miRNAs for each stage from the chosen miRNAs, respectively. Description  miRNA with decreased expression in prg-1(wm161) L4 larva comparing to in prg-1(wm161) L3 larva.
Primary Identifier  WBPaper00045316:miRNA_prg-1_L4_vs_L3_downregulated_adult

0 Anatomy Terms

18 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003039 mir-48 F56A12.3 Caenorhabditis elegans
WBGene00003261 mir-2 M04C9.7 Caenorhabditis elegans
WBGene00003262 mir-34 Y41G9A.7 Caenorhabditis elegans
WBGene00003339 mir-245 F55D12.7 Caenorhabditis elegans
WBGene00003307 mir-79 C12C8.4 Caenorhabditis elegans
WBGene00045329 mir-795 F33E2.9 Caenorhabditis elegans
WBGene00003300 mir-72 F53G2.9 Caenorhabditis elegans
WBGene00003288 mir-60 C32D5.13 Caenorhabditis elegans
WBGene00003292 mir-64 Y48G9A.13 Caenorhabditis elegans
WBGene00003293 mir-65 Y48G9A.14 Caenorhabditis elegans
WBGene00003294 mir-66 Y48G9A.15 Caenorhabditis elegans
WBGene00077725 mir-1832.1 C18D11.11 Caenorhabditis elegans
WBGene00003314 mir-86 Y56A3A.34 Caenorhabditis elegans
WBGene00003274 mir-46 ZK525.3 Caenorhabditis elegans
WBGene00003325 mir-232 F13H10.7 Caenorhabditis elegans
WBGene00003319 mir-124 C29E6.7 Caenorhabditis elegans
WBGene00003302 mir-74 T24D8.7 Caenorhabditis elegans
WBGene00003277 mir-49 F19C6.6 Caenorhabditis elegans

3 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The third stage larva. At 25 Centigrade, it ranges 32.5-40 hours after fertilization, 18.5-26 hours after hatch. L3 larva Ce WBls:0000035
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

0 Regulated By Gene

0 Regulated By Molecule