WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 105, C10A4.6-C01A2.6, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:C10A4.6-C01A2.6

0 Anatomy Terms

16 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003252 mig-21 F01F1.13 Caenorhabditis elegans
WBGene00005508 srh-304 Y94A7B.9 Caenorhabditis elegans
WBGene00006928 vit-4 F59D8.2 Caenorhabditis elegans
WBGene00008568 F08A8.5 F08A8.5 Caenorhabditis elegans
WBGene00008843 arrd-9 F15A4.9 Caenorhabditis elegans
WBGene00012748 Y40H7A.11 Y40H7A.11 Caenorhabditis elegans
WBGene00015667 C10A4.6 C10A4.6 Caenorhabditis elegans
WBGene00017722 F22F7.4 F22F7.4 Caenorhabditis elegans
WBGene00020120 R160.3 R160.3 Caenorhabditis elegans
WBGene00012482 clec-106 Y18D10A.12 Caenorhabditis elegans
WBGene00007218 C01A2.6 C01A2.6 Caenorhabditis elegans
WBGene00014130 ZK892.6 ZK892.6 Caenorhabditis elegans
WBGene00021949 clec-164 Y55F3C.5 Caenorhabditis elegans
WBGene00015428 C04E7.1 C04E7.1 Caenorhabditis elegans
WBGene00008460 E02H4.2 E02H4.2 Caenorhabditis elegans
WBGene00004103 pqn-11 C09G1.1 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule