WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Statistical analysis was based on t-test for independent samples via SPSS. The results were further narrowed based on two criteria. Only the genes whose expression changed with a P < 0.05 and a fold change > 0.5, when compared to control, were considered as differentially expressed. Fold change was calculated as 2**(DeltaCt(treatment)-DeltaCt(control))-1. DeltaCt = Ct(miRNA)-Ct(aveMRNA). Description  miRNA that showed increased expression after 20uM nicotine treatment
Primary Identifier  WBPaper00042480:20uM_nicotine_upregulated

0 Anatomy Terms

2 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003308 mir-80 K01F9.3 Caenorhabditis elegans
WBGene00003307 mir-79 C12C8.4 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The third stage larva. At 25 Centigrade, it ranges 32.5-40 hours after fertilization, 18.5-26 hours after hatch. L3 larva Ce WBls:0000035
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038

0 Processes

0 Regulated By Gene

1 Regulated By Molecule

Name Primary Identifier
nicotine WBMol:00001980