WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Authors only considered miRNA regions with at least 1 reads per-million from one of the libraries. These were tested for differential expression using the edgeR package, setting the common dispersion to 0.1 (since they did not have biological replicates) and normalizing with the TMM method. False Discovery Rates were calculated using the Benjamini & Hochberg procedure. Description  miRNA that showed significantly increated expression after 12 hour starvation in L4 larva stage. Fold change was calculated by dividing the higher counts per million by the lower, but adding the sign from the logFC to indicate direction.
Primary Identifier  WBPaper00048790:12h-starvation_downregulated_miRNA Regulated By Treatment  12 hour starvation

0 Anatomy Terms

3 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002285 let-7 C05G5.6 Caenorhabditis elegans
WBGene00003307 mir-79 C12C8.4 Caenorhabditis elegans
WBGene00003313 mir-85 F49E12.11 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038

0 Processes

0 Regulated By Gene

0 Regulated By Molecule