WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  A gene model was built based on the WS260 annotation. Tag counts for each gene were extracted from STAR aligned BAM files, anddifferential gene expression between N2 and mutant backgrounds was tested using DESeq2. A false discovery rate(FDR) < 0.01 and LFC > 0.5849 was used to define genes as upregulated, and FDR < 0.01 and LFC < -1 was used to define genes asdownregulated. Description  Transcripts that showed significantly decreased expression in lin-36(n766) comparing to in N2 animals at starved L1 larva stage.
Primary Identifier  WBPaper00062056:lin-36(n766)_downregulated

0 Anatomy Terms

11 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001433 fkb-8 Y18D10A.25 Caenorhabditis elegans
WBGene00015270 C01B4.6 C01B4.6 Caenorhabditis elegans
WBGene00017756 F23F12.12 F23F12.12 Caenorhabditis elegans
WBGene00044734 Y19D10A.16 Y19D10A.16 Caenorhabditis elegans
WBGene00021222 irld-53 Y19D10A.7 Caenorhabditis elegans
WBGene00021224 clec-209 Y19D10A.9 Caenorhabditis elegans
WBGene00015731 C13B7.6 C13B7.6 Caenorhabditis elegans
WBGene00018917 irld-35 F56A4.9 Caenorhabditis elegans
WBGene00018910 F56A4.2 F56A4.2 Caenorhabditis elegans
WBGene00044131 Y45G12C.16 Y45G12C.16 Caenorhabditis elegans
WBGene00010212 fbxa-192 F57G4.8 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003021 lin-36 F44B9.6 Caenorhabditis elegans

0 Regulated By Molecule