WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  To identify the genes that show consistent and significant expression changes across the independent biological replicates of hcf-1(-) or sir-2.1(O/E), authors used Significance Analysis of Microarrays (SAM) with a stringent criteria of expected false discovery rate (FDR) set at 0%. Description  Genes upregulated in hcf-1(-), no change in sir-2.1(O/E) and upregulated in daf-2(-).
Primary Identifier  WBPaper00040184:hcf-1up_sir-2.1nc_daf-2up
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0 Anatomy Terms

13 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006411 octr-1 F14D12.6 Caenorhabditis elegans
WBGene00008332 C55A6.3 C55A6.3 Caenorhabditis elegans
WBGene00015355 C02F12.5 C02F12.5 Caenorhabditis elegans
WBGene00017663 F21D12.3 F21D12.3 Caenorhabditis elegans
WBGene00020200 T04A6.1 T04A6.1 Caenorhabditis elegans
WBGene00021156 Y4C6B.2 Y4C6B.2 Caenorhabditis elegans
WBGene00021148 W10G11.19 W10G11.19 Caenorhabditis elegans
WBGene00017128 E04F6.9 E04F6.9 Caenorhabditis elegans
WBGene00013013 clec-145 Y48E1B.16 Caenorhabditis elegans
WBGene00008352 fbxa-6 cTel54X.1 Caenorhabditis elegans
WBGene00021161 Y4C6B.7 Y4C6B.7 Caenorhabditis elegans
WBGene00012886 Y45F10D.6 Y45F10D.6 Caenorhabditis elegans
WBGene00016894 C53B7.3 C53B7.3 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

2 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000898 daf-2 Y55D5A.5 Caenorhabditis elegans
WBGene00001827 hcf-1 C46A5.9 Caenorhabditis elegans

0 Regulated By Molecule