WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

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Expression Cluster :

Algorithm  To identify the genes that show consistent and significant expression changes across the independent biological replicates of hcf-1(-) or sir-2.1(O/E), authors used Significance Analysis of Microarrays (SAM) with a stringent criteria of expected false discovery rate (FDR) set at 0%. Description  Genes downregulated in hcf-1(-), upregulated in sir-2.1(O/E) and no change in daf-2(-).
Primary Identifier  WBPaper00040184:hcf-1down_sir-2.1up_daf-2nc
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0 Anatomy Terms

40 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000781 cpr-1 C52E4.1 Caenorhabditis elegans
WBGene00000786 cpr-6 C25B8.3 Caenorhabditis elegans
WBGene00001240 elo-2 F11E6.5 Caenorhabditis elegans
WBGene00001243 elo-5 F41H10.7 Caenorhabditis elegans
WBGene00001805 gur-4 K09E4.5 Caenorhabditis elegans
WBGene00006418 spl-2 B0222.4 Caenorhabditis elegans
WBGene00007422 ugt-17 C08B6.1 Caenorhabditis elegans
WBGene00007549 spin-1 C13C4.5 Caenorhabditis elegans
WBGene00008354 gcsh-1 D1025.2 Caenorhabditis elegans
WBGene00008565 acox-1.2 F08A8.2 Caenorhabditis elegans
WBGene00008566 acox-1.3 F08A8.3 Caenorhabditis elegans
WBGene00009189 F27D4.4 F27D4.4 Caenorhabditis elegans
WBGene00009686 ent-7 F44D12.9 Caenorhabditis elegans
WBGene00010204 cpr-9 F57F5.1 Caenorhabditis elegans
WBGene00010769 asah-1 K11D2.2 Caenorhabditis elegans
WBGene00011000 R03G8.6 R03G8.6 Caenorhabditis elegans
WBGene00013007 Y48E1B.8 Y48E1B.8 Caenorhabditis elegans
WBGene00014106 ZK856.5 ZK856.5 Caenorhabditis elegans
WBGene00014206 nit-1 ZK1058.6 Caenorhabditis elegans
WBGene00015400 cyp-35A2 C03G6.15 Caenorhabditis elegans
WBGene00016705 slcr-46.1 C46C11.2 Caenorhabditis elegans
WBGene00016957 atic-1 C55F2.1 Caenorhabditis elegans
WBGene00017565 ddo-2 F18E3.7 Caenorhabditis elegans
WBGene00017658 F21C10.9 F21C10.9 Caenorhabditis elegans
WBGene00018488 acs-1 F46E10.1 Caenorhabditis elegans
WBGene00018886 npr-28 F55E10.7 Caenorhabditis elegans
WBGene00019270 H41C03.3 H41C03.3 Caenorhabditis elegans
WBGene00019473 cyp-35A5 K07C6.5 Caenorhabditis elegans
WBGene00019546 glct-6 W07G9.2 Caenorhabditis elegans
WBGene00019547 K09C4.1 K09C4.1 Caenorhabditis elegans
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2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

2 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001827 hcf-1 C46A5.9 Caenorhabditis elegans
WBGene00004800 sir-2.1 R11A8.4 Caenorhabditis elegans

0 Regulated By Molecule