WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Differential expression was calculated by empirical Bayes method using the eBayes function, and control of FDR was employed as the multiple testing correction. Genes with a false-discovery rate (FDR)-corrected P value of <= 0.05 and an absolute fold change greater than or equal to a cutoff of 1.5 on a log2 scale were called differentially expressed. Description  Genes up regulated by nasp-1. This experiment compares nasp-1 mutant versus N2 strain in C. elegans, after both have been exposed to the pathogenic bacteria B. thuringiensis DB27.
Primary Identifier  WBPaper00044013:nasp-1_upregulated

0 Anatomy Terms

30 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000136 amt-4 C05E11.5 Caenorhabditis elegans
WBGene00000660 col-85 T21B4.2 Caenorhabditis elegans
WBGene00000667 col-92 W05B2.6 Caenorhabditis elegans
WBGene00000668 col-93 W05B2.5 Caenorhabditis elegans
WBGene00000673 col-98 F14F7.1 Caenorhabditis elegans
WBGene00000975 dhs-12 K08F4.9 Caenorhabditis elegans
WBGene00002055 ifc-1 F37B4.2 Caenorhabditis elegans
WBGene00003099 lys-10 F17E9.11 Caenorhabditis elegans
WBGene00008220 C50B6.7 C50B6.7 Caenorhabditis elegans
WBGene00008485 ugt-43 F01D4.1 Caenorhabditis elegans
WBGene00008492 F01D5.1 F01D5.1 Caenorhabditis elegans
WBGene00008621 F09C8.1 F09C8.1 Caenorhabditis elegans
WBGene00008741 ctsa-1.2 F13D12.6 Caenorhabditis elegans
WBGene00011059 R06C1.4 R06C1.4 Caenorhabditis elegans
WBGene00011112 R07E5.4 R07E5.4 Caenorhabditis elegans
WBGene00013037 Y49E10.18 Y49E10.18 Caenorhabditis elegans
WBGene00013073 hmit-1.1 Y51A2D.4 Caenorhabditis elegans
WBGene00018174 F38B6.4 F38B6.4 Caenorhabditis elegans
WBGene00018223 bath-13 F40B1.1 Caenorhabditis elegans
WBGene00018195 btb-16 F39E9.2 Caenorhabditis elegans
WBGene00003433 msp-37 K08F4.10 Caenorhabditis elegans
WBGene00017501 pud-3 F15E11.15 Caenorhabditis elegans
WBGene00017498 pud-4 F15E11.12 Caenorhabditis elegans
WBGene00018062 F35F10.13 F35F10.13 Caenorhabditis elegans
WBGene00009982 F53F1.4 F53F1.4 Caenorhabditis elegans
WBGene00014955 Y102A5C.6 Y102A5C.6 Caenorhabditis elegans
WBGene00219493 C18D4.12 C18D4.12 Caenorhabditis elegans
WBGene00010212 fbxa-192 F57G4.8 Caenorhabditis elegans
WBGene00010064 F54F7.2 F54F7.2 Caenorhabditis elegans
WBGene00019189 H11L12.1 H11L12.1 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007500 nasp-1 C09H10.6 Caenorhabditis elegans

0 Regulated By Molecule