WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All data normalization and calculation of fold-changes in gene levels were performed using GeneSpring GX 7.3 (Agilent Technology). The averages of the normalized ratios were calculated by dividing the average of the normalized signal channel intensities by the average of the normalized control channel intensities. Description  Genes with increased expression in response to heat-killed LP133 or LF21 cells compared with E. coli OP50 cells
Primary Identifier  WBPaper00048423:LP133_LF21_upregulated Regulated By Treatment  Bacteria diet: Lactobacillus plantarum LP133 or LF21. Approximately 200 three-day-old young adult worms were plated on OP50-conditioned dishes or OP50-conditioned dishes with heat-killed LP133 or LF21. Plates were incubated for 24 h at 16C; this process was repeated five times before harvesting the worms. After 24 h of treatment, RNA was isolated from four-day-old worms.

0 Anatomy Terms

24 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000556 cnc-2 R09B5.3 Caenorhabditis elegans
WBGene00000756 col-183 F02D10.1 Caenorhabditis elegans
WBGene00001399 fat-7 F10D2.9 Caenorhabditis elegans
WBGene00003474 mtl-2 T08G5.10 Caenorhabditis elegans
WBGene00004997 spp-12 T22G5.7 Caenorhabditis elegans
WBGene00005190 srg-33 F21F8.1 Caenorhabditis elegans
WBGene00005197 srg-40 T19C4.4 Caenorhabditis elegans
WBGene00005443 srh-236 Y68A4A.9 Caenorhabditis elegans
WBGene00005756 srw-9 ZC482.8 Caenorhabditis elegans
WBGene00006225 str-181 R11D1.6 Caenorhabditis elegans
WBGene00006742 unc-2 T02C5.5 Caenorhabditis elegans
WBGene00007153 clec-41 B0365.6 Caenorhabditis elegans
WBGene00007865 srz-15 C32H11.2 Caenorhabditis elegans
WBGene00011860 pigc-1 T20D3.8 Caenorhabditis elegans
WBGene00013025 vha-13 Y49A3A.2 Caenorhabditis elegans
WBGene00015068 srt-68 B0238.3 Caenorhabditis elegans
WBGene00015709 cyp-33A1 C12D5.7 Caenorhabditis elegans
WBGene00016943 acdh-1 C55B7.4 Caenorhabditis elegans
WBGene00019470 cyp-35B3 K07C6.2 Caenorhabditis elegans
WBGene00019472 cyp-35B1 K07C6.4 Caenorhabditis elegans
WBGene00020106 R151.1 R151.1 Caenorhabditis elegans
WBGene00021580 clec-174 Y46C8AL.2 Caenorhabditis elegans
WBGene00022644 dod-19 ZK6.10 Caenorhabditis elegans
WBGene00044953 D2096.13 D2096.13 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  At 20 Centigrade: 96-120 hours after L4-adult molt. 7-8 days after first cleavage. 4-days post-L4 adult hermaphrodite Ce WBls:0000067

0 Processes

0 Regulated By Gene

0 Regulated By Molecule