WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  To identify the genes that show consistent and significant expression changes across the independent biological replicates of hcf-1(-) or sir-2.1(O/E), authors used Significance Analysis of Microarrays (SAM) with a stringent criteria of expected false discovery rate (FDR) set at 0%. Description  Genes upregulated in hcf-1(-), no change in sir-2.1(O/E) and no change in daf-2(-).
Primary Identifier  WBPaper00040184:hcf-1up_sir-2.1nc_daf-2nc
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0 Anatomy Terms

7 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000289 cam-1 C01G6.8 Caenorhabditis elegans
WBGene00001887 his-13 ZK131.7 Caenorhabditis elegans
WBGene00003476 mtm-3 T24A11.1 Caenorhabditis elegans
WBGene00010755 vglu-2 K10G9.1 Caenorhabditis elegans
WBGene00012947 Y47H9C.1 Y47H9C.1 Caenorhabditis elegans
WBGene00018874 tag-234 F55C12.7 Caenorhabditis elegans
WBGene00009577 F40F8.4 F40F8.4 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001827 hcf-1 C46A5.9 Caenorhabditis elegans

0 Regulated By Molecule