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heat-shock hlh-1 |
Genes enriched in HLH-1 heat shock dataset. |
A two-class unpaired analysis was performed to identify genes that are elevated 1.7-fold or greater when compared with the reference for each dataset, at a false discovery rate of 1.8% or less for M0 and 1.2% or less for the M24 datasets. |
WBPaper00031003:hlh_1_enriched
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Genes depleted in muscle cells (24hr muscle dataset). Dissociated myo-3::GFP embryos were cultured for 24 hours before FACS sorting. |
A two-class unpaired analysis was performed to identify genes that are elevated 1.7-fold or greater when compared with the reference for each dataset, at a false discovery rate of 1.8% or less for M0 and 1.2% or less for the M24 datasets. |
WBPaper00031003:24hr_muscle_depleted
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Total muscle depleted genes (complete list of non-overlapping genes from the 0hr and 24hr muscle depleted datasets). |
A two-class unpaired analysis was performed to identify genes that are elevated 1.7-fold or greater when compared with the reference for each dataset, at a false discovery rate of 1.8% or less for M0 and 1.2% or less for the M24 datasets. |
WBPaper00031003:total_muscle_depleted
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Genes upregulated by fer-1 mutants hc1 and hc24, with > 4 fold change in expression level. |
Data across the wild-type series was analyzed using the significance analysis of microarray data (SAM) algorithm to calculate the false discovery rate (FDR). Authors calculated expression ratios of wild-type/fer-1 mutants, and genes that exhibited a <= 0.1% FDR, >= 4-fold change in both fer-1 mutants, and differed by <= 2-fold between hc1 and hc24 were considered to be fer-1-regulated genes. |
WBPaper00035197:fer-1_upregulated
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Genes enriched in muscle cells (24hr muscle dataset). Dissociated myo-3::GFP embryos were cultured for 24 hours before FACS sorting. |
A two-class unpaired analysis was performed to identify genes that are elevated 1.7-fold or greater when compared with the reference for each dataset, at a false discovery rate of 1.8% or less for M0 and 1.2% or less for the M24 datasets. |
WBPaper00031003:24hr_muscle_enriched
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Total muscle enriched genes (complete list of non-overlapping genes from the 0hr and 24hr muscle enriched datasets). |
A two-class unpaired analysis was performed to identify genes that are elevated 1.7-fold or greater when compared with the reference for each dataset, at a false discovery rate of 1.8% or less for M0 and 1.2% or less for the M24 datasets. |
WBPaper00031003:total_muscle_enriched
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Genes depleted in muscle cells (0hr muscle dataset). Dissociated myo-3::GFP embryos were cultured for 0 hours before FACS sorting. |
A two-class unpaired analysis was performed to identify genes that are elevated 1.7-fold or greater when compared with the reference for each dataset, at a false discovery rate of 1.8% or less for M0 and 1.2% or less for the M24 datasets. |
WBPaper00031003:0hr_muscle_depleted
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Genes enriched in muscle cells (0hr muscle dataset). Dissociated myo-3::GFP embryos were cultured for 0 hours before FACS sorting. |
A two-class unpaired analysis was performed to identify genes that are elevated 1.7-fold or greater when compared with the reference for each dataset, at a false discovery rate of 1.8% or less for M0 and 1.2% or less for the M24 datasets. |
WBPaper00031003:0hr_muscle_enriched
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Genes downregulated by fer-1 mutants hc1 and hc24, with > 4 fold change in expression level. |
Data across the wild-type series was analyzed using the significance analysis of microarray data (SAM) algorithm to calculate the false discovery rate (FDR). Authors calculated expression ratios of wild-type/fer-1 mutants, and genes that exhibited a <= 0.1% FDR, >= 4-fold change in both fer-1 mutants, and differed by <= 2-fold between hc1 and hc24 were considered to be fer-1-regulated genes. |
WBPaper00035197:fer-1_downregulated
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Genes enriched in muscle. |
A Student t-test was used to determine which genes showed a mean enrichment significantly greater than the mean enrichment for all genes. |
[cgc5428]:clustered_muscle_genes
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The cluster contains genes that are significantly enriched in L1 muscle. |
A Student t-test was used to determine which genes showed a mean enrichment significantly greater than the mean enrichment for all genes. |
[cgc5428]:L1_muscle_enriched
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