WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 241, T02E1.2-uri-1, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:T02E1.2-uri-1

0 Anatomy Terms

50 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000519 cku-70 Y47D3A.4 Caenorhabditis elegans
WBGene00000585 cogc-2 C06G3.10 Caenorhabditis elegans
WBGene00001048 dnj-30 Y71F9B.16 Caenorhabditis elegans
WBGene00001584 nrde-4 F45E4.10 Caenorhabditis elegans
WBGene00004064 pms-2 H12C20.2 Caenorhabditis elegans
WBGene00006061 stl-1 F30A10.5 Caenorhabditis elegans
WBGene00006944 wrn-1 F18C5.2 Caenorhabditis elegans
WBGene00007100 asps-1 B0024.10 Caenorhabditis elegans
WBGene00007167 rbg-3 B0393.2 Caenorhabditis elegans
WBGene00007488 dph-2 C09G5.2 Caenorhabditis elegans
WBGene00008528 F02E9.1 F02E9.1 Caenorhabditis elegans
WBGene00008642 ints-11 F10B5.8 Caenorhabditis elegans
WBGene00009944 mtcu-2 F52H3.2 Caenorhabditis elegans
WBGene00010096 rskd-1 F55C5.7 Caenorhabditis elegans
WBGene00010476 rnf-113 K01G5.1 Caenorhabditis elegans
WBGene00011237 gkow-1 R11A8.2 Caenorhabditis elegans
WBGene00014018 ZK632.11 ZK632.11 Caenorhabditis elegans
WBGene00015194 trul-1 B0432.13 Caenorhabditis elegans
WBGene00015310 fan-1 C01G5.8 Caenorhabditis elegans
WBGene00015463 hpo-9 C05C8.6 Caenorhabditis elegans
WBGene00015642 C09E7.8 C09E7.8 Caenorhabditis elegans
WBGene00015815 C16A11.2 C16A11.2 Caenorhabditis elegans
WBGene00015915 C17G10.1 C17G10.1 Caenorhabditis elegans
WBGene00016311 efr-3 C32D5.3 Caenorhabditis elegans
WBGene00016492 etfm-1 C37A2.6 Caenorhabditis elegans
WBGene00016494 C37A2.8 C37A2.8 Caenorhabditis elegans
WBGene00016793 arp-11 C49H3.8 Caenorhabditis elegans
WBGene00016944 uri-1 C55B7.5 Caenorhabditis elegans
WBGene00016960 vps-33.2 C56C10.1 Caenorhabditis elegans
WBGene00018132 F37A4.2 F37A4.2 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule