WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  To identify the genes that show consistent and significant expression changes across the independent biological replicates of hcf-1(-) or sir-2.1(O/E), authors used Significance Analysis of Microarrays (SAM) with a stringent criteria of expected false discovery rate (FDR) set at 0%. Description  Genes with no change in hcf-1(-), downregulated in sir-2.1(O/E) and no change in daf-2(-).
Primary Identifier  WBPaper00040184:hcf-1nc_sir-2.1down_daf-2nc
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0 Anatomy Terms

18 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000298 cat-4 F32G8.6 Caenorhabditis elegans
WBGene00002016 hsp-16.2 Y46H3A.3 Caenorhabditis elegans
WBGene00006677 twk-24 F55C5.3 Caenorhabditis elegans
WBGene00007801 trpa-1 C29E6.2 Caenorhabditis elegans
WBGene00010595 haao-1 K06A4.5 Caenorhabditis elegans
WBGene00011291 R102.4 R102.4 Caenorhabditis elegans
WBGene00015587 lido-2 C08A9.7 Caenorhabditis elegans
WBGene00016415 ampd-1 C34F11.3 Caenorhabditis elegans
WBGene00018878 glit-1 F55D10.3 Caenorhabditis elegans
WBGene00020579 T19D12.4 T19D12.4 Caenorhabditis elegans
WBGene00044107 chca-1 F58G6.9 Caenorhabditis elegans
WBGene00304992 F35C12.7 F35C12.7 Caenorhabditis elegans
WBGene00018303 F41G3.10 F41G3.10 Caenorhabditis elegans
WBGene00021918 Y55D5A.4 Y55D5A.4 Caenorhabditis elegans
WBGene00020591 nhr-220 T19H12.8 Caenorhabditis elegans
WBGene00007393 fbxa-157 C06H5.2 Caenorhabditis elegans
WBGene00009292 F31D4.5 F31D4.5 Caenorhabditis elegans
WBGene00018537 F47B7.6 F47B7.6 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004800 sir-2.1 R11A8.4 Caenorhabditis elegans

0 Regulated By Molecule