WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  To identify the genes that show consistent and significant expression changes across the independent biological replicates of hcf-1(-) or sir-2.1(O/E), authors used Significance Analysis of Microarrays (SAM) with a stringent criteria of expected false discovery rate (FDR) set at 0%. Description  Genes with no change in hcf-1(-), upregulated in sir-2.1(O/E) and upregulated in daf-2(-).
Primary Identifier  WBPaper00040184:hcf-1nc_sir-2.1up_daf-2up
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0 Anatomy Terms

28 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000912 daf-16 R13H8.1 Caenorhabditis elegans
WBGene00001397 fat-5 W06D12.3 Caenorhabditis elegans
WBGene00001478 fmo-3 Y39A1A.19 Caenorhabditis elegans
WBGene00008538 sqrd-1 F02H6.5 Caenorhabditis elegans
WBGene00008714 F11F1.1 F11F1.1 Caenorhabditis elegans
WBGene00010062 lipl-1 F54F3.3 Caenorhabditis elegans
WBGene00011416 T04A11.1 T04A11.1 Caenorhabditis elegans
WBGene00014001 pyk-2 ZK593.1 Caenorhabditis elegans
WBGene00015434 C04E12.4 C04E12.4 Caenorhabditis elegans
WBGene00015464 C05C8.7 C05C8.7 Caenorhabditis elegans
WBGene00016754 cebp-2 C48E7.11 Caenorhabditis elegans
WBGene00018403 F44A2.3 F44A2.3 Caenorhabditis elegans
WBGene00018602 F48D6.4 F48D6.4 Caenorhabditis elegans
WBGene00019653 cest-31 K11G9.2 Caenorhabditis elegans
WBGene00019655 K11G9.5 K11G9.5 Caenorhabditis elegans
WBGene00019963 rips-1 R08E5.3 Caenorhabditis elegans
WBGene00020797 T25D3.3 T25D3.3 Caenorhabditis elegans
WBGene00021407 Y38C1AB.5 Y38C1AB.5 Caenorhabditis elegans
WBGene00021487 comt-3 Y40B10A.2 Caenorhabditis elegans
WBGene00022797 best-24 ZK688.2 Caenorhabditis elegans
WBGene00077770 M04D5.3 M04D5.3 Caenorhabditis elegans
WBGene00018448 F45D11.1 F45D11.1 Caenorhabditis elegans
WBGene00022495 fbxa-78 Y119D3B.19 Caenorhabditis elegans
WBGene00015163 B0361.9 B0361.9 Caenorhabditis elegans
WBGene00306134 srlf-8 F11F1.9 Caenorhabditis elegans
WBGene00011694 T10G3.3 T10G3.3 Caenorhabditis elegans
WBGene00007957 C35C5.8 C35C5.8 Caenorhabditis elegans
WBGene00009789 F46F2.5 F46F2.5 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

2 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000898 daf-2 Y55D5A.5 Caenorhabditis elegans
WBGene00004800 sir-2.1 R11A8.4 Caenorhabditis elegans

0 Regulated By Molecule