WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 33, 172616_x_at-172712_x_at, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:172616_x_at-172712_x_at

0 Anatomy Terms

6 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000617 col-40 T13B5.4 Caenorhabditis elegans
WBGene00008999 myrf-2 F21A10.2 Caenorhabditis elegans
WBGene00021852 Y54F10AM.8 Y54F10AM.8 Caenorhabditis elegans
WBGene00022365 Y92H12BL.4 Y92H12BL.4 Caenorhabditis elegans
WBGene00020173 T02H6.3 T02H6.3 Caenorhabditis elegans
WBGene00021821 Y54B9A.1 Y54B9A.1 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule