WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 179, clec-13-F35E8.10, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:clec-13-F35E8.10

0 Anatomy Terms

24 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000782 cpr-2 F36D3.9 Caenorhabditis elegans
WBGene00005644 srp-3 Y32G9A.4 Caenorhabditis elegans
WBGene00008575 scl-24 F08E10.7 Caenorhabditis elegans
WBGene00011841 scl-25 T19C9.5 Caenorhabditis elegans
WBGene00012518 comt-2 Y32B12A.3 Caenorhabditis elegans
WBGene00018543 ugt-32 F47C10.6 Caenorhabditis elegans
WBGene00018988 F56F11.1 F56F11.1 Caenorhabditis elegans
WBGene00019977 fpn-1.2 R09B5.4 Caenorhabditis elegans
WBGene00020326 math-38 T07H3.3 Caenorhabditis elegans
WBGene00020741 dlhd-1 T23F4.3 Caenorhabditis elegans
WBGene00021072 W07B8.4 W07B8.4 Caenorhabditis elegans
WBGene00021635 Y47G6A.5 Y47G6A.5 Caenorhabditis elegans
WBGene00022641 ZK6.6 ZK6.6 Caenorhabditis elegans
WBGene00022870 ZK1240.5 ZK1240.5 Caenorhabditis elegans
WBGene00010399 clec-13 H16D19.1 Caenorhabditis elegans
WBGene00010400 clec-14 H16D19.2 Caenorhabditis elegans
WBGene00019699 math-34 M01D1.2 Caenorhabditis elegans
WBGene00019421 K05F6.10 K05F6.10 Caenorhabditis elegans
WBGene00012582 clec-8 Y38E10A.4 Caenorhabditis elegans
WBGene00021587 clec-76 Y46C8AR.1 Caenorhabditis elegans
WBGene00018624 F48G7.13 F48G7.13 Caenorhabditis elegans
WBGene00020241 T05B4.10 T05B4.10 Caenorhabditis elegans
WBGene00009423 F35E8.10 F35E8.10 Caenorhabditis elegans
WBGene00011209 R10E8.3 R10E8.3 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule