WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 233, his-46_959-his-64, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:his-46_959-his-64

0 Anatomy Terms

18 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001875 his-1 T10C6.14 Caenorhabditis elegans
WBGene00001879 his-5 F45F2.3 Caenorhabditis elegans
WBGene00001884 his-10 ZK131.4 Caenorhabditis elegans
WBGene00001885 his-11 ZK131.5 Caenorhabditis elegans
WBGene00001886 his-12 ZK131.6 Caenorhabditis elegans
WBGene00001892 his-18 K06C4.10 Caenorhabditis elegans
WBGene00001902 his-28 K06C4.2 Caenorhabditis elegans
WBGene00001904 his-30 F35H10.1 Caenorhabditis elegans
WBGene00001905 his-31 F17E9.12 Caenorhabditis elegans
WBGene00001912 his-38 K03A1.6 Caenorhabditis elegans
WBGene00001920 his-46 B0035.9 Caenorhabditis elegans
WBGene00001921 his-47 B0035.7 Caenorhabditis elegans
WBGene00001935 his-61 F55G1.10 Caenorhabditis elegans
WBGene00001936 his-62 F55G1.3 Caenorhabditis elegans
WBGene00001938 his-64 F22B3.1 Caenorhabditis elegans
WBGene00001941 his-67 T23D8.5 Caenorhabditis elegans
WBGene00001942 his-68 T23D8.6 Caenorhabditis elegans
WBGene00014291 C52E4.8 C52E4.8 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule