WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 203, sre-33-ZK1025.1_8337, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:sre-33-ZK1025.1_8337

0 Anatomy Terms

1000 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000038 ace-4 Y48B6A.7 Caenorhabditis elegans
WBGene00000100 ajm-1 C25A11.4 Caenorhabditis elegans
WBGene00000436 ceh-12 F33D11.4 Caenorhabditis elegans
WBGene00000438 ceh-14 F46C8.5 Caenorhabditis elegans
WBGene00000450 ceh-28 K03A11.3 Caenorhabditis elegans
WBGene00000483 che-1 C55B7.12 Caenorhabditis elegans
WBGene00000487 che-6 C23H5.7 Caenorhabditis elegans
WBGene00000583 cof-2 C48E7.5 Caenorhabditis elegans
WBGene00000598 col-9 F54B11.1 Caenorhabditis elegans
WBGene00000629 col-52 D1007.2 Caenorhabditis elegans
WBGene00000633 col-56 T08B2.2 Caenorhabditis elegans
WBGene00000645 col-69 K01A2.7 Caenorhabditis elegans
WBGene00000661 col-86 Y81G3A.5 Caenorhabditis elegans
WBGene00000674 col-99 F29C4.8 Caenorhabditis elegans
WBGene00000721 col-148 C12D8.8 Caenorhabditis elegans
WBGene00000760 col-187 C30F2.1 Caenorhabditis elegans
WBGene00000819 csp-1 Y48E1B.13 Caenorhabditis elegans
WBGene00000821 csp-3 Y47H9C.6 Caenorhabditis elegans
WBGene00001062 dpr-1 R10D12.2 Caenorhabditis elegans
WBGene00001063 dpy-1 M01E10.2 Caenorhabditis elegans
WBGene00001118 dyf-2 ZK520.3 Caenorhabditis elegans
WBGene00001137 eat-6 B0365.3 Caenorhabditis elegans
WBGene00001162 efl-2 Y48C3A.17 Caenorhabditis elegans
WBGene00001171 egl-2 F16B3.1 Caenorhabditis elegans
WBGene00001204 egl-38 C04G2.7 Caenorhabditis elegans
WBGene00001311 end-3 F58E10.5 Caenorhabditis elegans
WBGene00001330 eps-8 Y57G11C.24 Caenorhabditis elegans
WBGene00001492 frm-5.1 Y38C1AB.8 Caenorhabditis elegans
WBGene00001515 gap-1 T24C12.2 Caenorhabditis elegans
WBGene00001531 gcy-4 ZK970.5 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule