WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 181, C10C5.2-Y58A7A.3, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:C10C5.2-Y58A7A.3

0 Anatomy Terms

107 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000190 warf-1 F45E4.1 Caenorhabditis elegans
WBGene00000373 cyp-14A5 F08F3.7 Caenorhabditis elegans
WBGene00000841 cul-6 K08E7.7 Caenorhabditis elegans
WBGene00001757 gst-9 R05F9.5 Caenorhabditis elegans
WBGene00001772 gst-24 F37B1.1 Caenorhabditis elegans
WBGene00001817 haf-7 Y50E8A.16 Caenorhabditis elegans
WBGene00001859 hil-8 T05E8.2 Caenorhabditis elegans
WBGene00002063 ife-5 Y57A10A.30 Caenorhabditis elegans
WBGene00003524 nas-5 T23H4.3 Caenorhabditis elegans
WBGene00003999 pgp-5 C05A9.1 Caenorhabditis elegans
WBGene00004000 pgp-6 T21E8.1 Caenorhabditis elegans
WBGene00004002 pgp-8 T21E8.3 Caenorhabditis elegans
WBGene00004052 parg-2 H23L24.5 Caenorhabditis elegans
WBGene00004509 rrf-2 M01G12.12 Caenorhabditis elegans
WBGene00005649 srp-8 F20D6.3 Caenorhabditis elegans
WBGene00006539 tbb-6 T04H1.9 Caenorhabditis elegans
WBGene00006623 try-5 K07B1.1 Caenorhabditis elegans
WBGene00007440 C08E8.4 C08E8.4 Caenorhabditis elegans
WBGene00007506 fbxc-58 C10C5.2 Caenorhabditis elegans
WBGene00007574 C14B1.3 C14B1.3 Caenorhabditis elegans
WBGene00008099 C44H9.4 C44H9.4 Caenorhabditis elegans
WBGene00008577 F08G2.5 F08G2.5 Caenorhabditis elegans
WBGene00008681 scrm-4 F11A6.2 Caenorhabditis elegans
WBGene00008726 F13A7.11 F13A7.11 Caenorhabditis elegans
WBGene00008850 F15B9.6 F15B9.6 Caenorhabditis elegans
WBGene00009572 F40D4.13 F40D4.13 Caenorhabditis elegans
WBGene00009867 nimk-1 F49C5.4 Caenorhabditis elegans
WBGene00010019 F54B8.4 F54B8.4 Caenorhabditis elegans
WBGene00010470 cdr-4 K01D12.11 Caenorhabditis elegans
WBGene00010822 M01G12.9 M01G12.9 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule